BAC Information

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BAC

Clone NameMSMg01-211E18
Chromosome10 (Build37)
Map Location 32,310,861 - 32,311,237
singlet/doubletsinglet
Overlap geneTcba1
Upstream geneIbrdc1, LOC667752, LOC100040638
Downstream geneEG667761, Trdn, A330019N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211E18.T7 (MSMg01no211_e18.b1)MSMg01-211E18.TJ (MSMg01no211_e18.g1)
ACCAG393075AG393076
length1,2361,262
length of high quality
(start - end)
206 (151 - 356)377 (72 - 448)
definitionCHROMAT_FILE: MSMg01no211_e18.b1 PHD_FILE: MSMg01no211_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:20 2005CHROMAT_FILE: MSMg01no211_e18.g1 PHD_FILE: MSMg01no211_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCACTATGCGCCTATACATCCTATGGGAGAGGACCGCGGAATTCTTTG
TTATCTCTGTACCTCATTTTTAAAATAGGATTATTTGGCTCTCTGGTATC
TACCTTCTTGAGTTCTTTGTACATTTTGGATATTAGCCCTCTATTGGAAC
GATGTATGCTTGTTAAAAAACTTTTCCAATTTGTGGGTTGCCTTTTTGTC
CTATTGACAAGTGTCCTTTGCCTTACAGAAGCTTTTCAATTTTATGAGGT
CCTATTTGTCCATTTTTAATCTTTAGAGAATGAATCATTGGTATTCTGTT
CAGGAAATTTTCCCGTTTGCTGATTTGTTCAAAGTTGCTTCCTACTTTCT
CTTCTAGTAGAATTAGCTTATGTGGAGGTTCTTGATCCTTTTGTACCTGA
TCTTTGCGAAAGGAGATAAGAATCGGATCAATTTGCATTTTTTTTTTTCC
CCCCCCCCCCCCTAGNCTCATCTCCTCACAAAAAAAAAAGGGCCCCACTG
TATTGTTTTGGCTTCTTTATCAAAGATCAAGTGACCCTAGGTATGTGGGT
TTATTTCTGGGTCTCCACTTCTATTCCATTGATCTACTTGTTTTTCTCTG
TGCCAGCATAACGTCTTTTTCTACTATTGCTCTGTCTTAGAGCTTGAGGT
CCGGGATGGTAATTATCCCAGACACTCGTTCATTTTTGAGAATGGATTCA
CTGTCCTAGGTTTTTGCTCTTCTACATGCATTTTAAAATTGCTCTTTCCA
TATCCGTGATGAATTGAATTTGCATTTTCTTATGGCGATTGCCCTGAATC
TGTTGATTGCCCTTTGGTAAAAATGCCATTCTTACTATGCTAATCCTGAT
GACCCCACAACTTCTTCTATCTCATCATCTTCTGAAGCCTCTGATTTCCT
TCTTCCGATATTGCAGTTTTTCGTCTTACAAATATTTCCCTTGCTTGATT
ATAGTCCCCACCAATTATTTCTAATCCCTCTGACTTTTCTTTGAATCTGT
CTTTCCTTTTTCTACCACCTGACAATATTCTTTTCCTTTTTTTTTCCTTC
CCACTTCTAGGATTTTTTTTTTCTTCAATATTTTTCCCCTTCTCTCTTAT
TTACTCTTACCTTCTCTTTTCTTTATTTTTTATTCTAATCTCTGTTCCTC
TTGCTTCATTCTTCCTCTTTACTCTTTTCTTATCTACAAATCTATTTCAA
TTATTCCCTTCTTTTTCCTCTNTAATCTTACACCAC
NNGGTTTTCTTGCGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACATTATTACATTTCCTTTGCACTTTCAT
ATGAAAGCAACTATATGCAACAGTTTTTATTGCCAGAGGAAAGTACCACT
GAAATCTTCCTGCAAATCAAAAAATGGATTATTTTCTATCTTCCCCAGTA
TAAAGAGAAAATGAAAATTCAGTCCAGGAGAATAAAAATTATCTTATTAG
TAATATATAAGACAATCCAGATGAGTGTAGTTGAAATTTTTTACTTGTAG
GCAAGACAAAATTTTAAATTATTAACTTCAGTAAGAAACACATAACCAAT
ATGAAAATTAATAAAATTCAATTTCCTGTCAATTATATGGAAATATTCTT
TTTAGCAATTCTCTTGTCATTACGTTAAGTTAGATGATTTTGGACAGATT
TTTTTTTCCCCCCCCCCCCGAAGGNNATTTCTCTCCCAAAAAAAGGGGGG
CGACNCCTTTTATCAAAGACTTAGGTATCCATTTCTTAAAGATAGATTCT
TTAACATGATAGCCTAGCCCTCTACACAGTGACCTAAGTCCTTAATTCTC
ATTCATGTTCCTGGAAGAAATGATCAAGTTAGAAAAGGGCACTATCATAC
TATGAATCAACATACTTCCCTGCCACGCTAAACATGGGGTTGGAATGAGG
GATTCTTATGTCCTCATTAGTTGAGTACTCAATTGGTCACAAAGCCTAGT
GTAAGGATTGGAGAGATTATTCTTAGAGGGTCTTCCAAAAAAAAACACTG
GAGGTTTTTTGCATTTTTTTTTTTCTCTTTTCCACCGCTTAAGCTTAAAT
GCTATCCTTATGATAAATTTCCCTCTTTTGTTTCCCTTCTTTGAATCCCT
CTACTTTATGATTGTCTTATTACTTTAAAATTTTATAGCAATTTAAAAAT
TTTTTGCTTATTTTATCCTCTTCCCTTTTTGATTCCTCTATATATTTTCT
ATGTATCTTTTTCTTCTAATCCTTTCCTTCCTATTCTTGATTGATATATC
CATTTTTTTCTTATATTTATCTTCATATTTTTATTTTTTATTTTTTTTCT
TTCTACTCTATTTATTCTTTATTTCTTTCTATTTTCTATTCCTTACTTTG
TCATATGTTTCTATCCTTTTCTTTCTTCCTTTCTTTTCTTTTTTTCTCCT
ATTCTACTTCCTCATTCTTCTCTTTTATTTTTTATTCTATATTCATTTTA
TATTTATTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_e18.g1 MSMg01no211_e18.g1 CHROMAT_FILE:
MSMg01no211_e18.g1 PHD_FILE: MSMg01no211_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:20 2005
         (377 letters)



>mm_chr10_32310661_32311437
          Length = 777

 Score =  652 bits (337), Expect = 0.0
 Identities = 367/377 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acattattacatttcctttgcactttcatatgaaagcaactatatgcaacagtttttatt 60
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 201 acattattacatttcctttgtaatttcatatgaaagcaactatatgcaacagtttttatt 260

                                                                       
Query: 61  gccagaggaaagtaccactgaaatcttcctgcaaatcaaaaaatggattattttctatct 120
           | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 gtcagaggaaagtaccactgaaatcttcctgcaaatcagaaaatggattattttctatct 320

                                                                       
Query: 121 tccccagtataaagagaaaatgaaaattcagtccaggagaataaaaattatcttattagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccccagtataaagagaaaatgaaaattcagtccaggagaataaaaattatcttattagt 380

                                                                       
Query: 181 aatatataagacaatccagatgagtgtagttgaaattttttacttgtaggcaagacaaaa 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatatataagacaatccagacgagtgtagttgaaattttttacttgtaggcaagacaaaa 440

                                                                       
Query: 241 ttttaaattattaacttcagtaagaaacacataaccaatatgaaaattaataaaattcaa 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttaaattattaacttcaataagaaacacataaccaatatgaaaattaataaaattcaa 500

                                                                       
Query: 301 tttcctgtcaattatatggaaatattctttttagcaattctcttgtcattacgttaagtt 360
           |||||||| ||||||||||||||||||| || ||||||||||||||||||||| ||||||
Sbjct: 501 tttcctgtgaattatatggaaatattctgttcagcaattctcttgtcattacggtaagtt 560

                            
Query: 361 agatgattttggacaga 377
           |||||||||||||||||
Sbjct: 561 agatgattttggacaga 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)