BAC Information

Click to search

BAC

Clone NameMSMg01-211H19
Chromosome10 (Build37)
Map Location 94,207,137 - 94,207,450
singlet/doubletsinglet
Overlap gene4921537D05Rik
Upstream geneNtn4, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3, EG667315
Downstream genePlxnc1, Cradd, Socs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4, EG628119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211H19.T7 (MSMg01no211_h19.b1)MSMg01-211H19.TJ (MSMg01no211_h19.g1)
ACCAG393187AG393188
length731732
length of high quality
(start - end)
320 (46 - 365)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no211_h19.b1 PHD_FILE: MSMg01no211_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:40 2005CHROMAT_FILE: MSMg01no211_h19.g1 PHD_FILE: MSMg01no211_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTATATCCTGAATTTACTACTCTGTGTTTTATATGTTTTGATTA
GAGGTGGAGACACTGTTGAAATTTCCCTAAATTCTTATCATGTAGACATT
TAATTTTTATCTGCTGACACAAATGAGGAAGAAGTCCACTAGTTGATTTC
TAGTGGGATTTATACTATAGAAAGTTGGAAGAATTGTTAGTGATCAACAG
AAAAAGGCTTTGTTGCACTTAGGAAATTGGATCCCAATGAAATCAACAGA
ATATTAAAGATATGAAATAGCTTGCCTAAGACTACACAGTTACTGACCAG
TCAAAACATTATATTTATTTACACACACACACACACACACACACACACAC
ACACACACACACACACACACGAAATAAAATGAATGAGTTAGGATTCAAAA
TATGTTCAAAGCCCATAGTCTCTCTTTTGTATTTCATTACCTGATCCAGA
ATGGCATCATTTCTTTTTTTAAATTTTTTTAATTAGGTATTTTCTTCATT
TACATTTTAAGTGCTATCCCAAAAGTCCCCCAGGTACCCCCCCCTTCCCT
ACCCACCCACTCCCACTTCTTGGCCCTGGCATTTCCCTGTACTGGGGCAT
ATAAAGCTTGCAAGACCAAGGGGCCTCTCTTCCCAATGATGGCCGACCTG
GCCATCTTCTGATACATATGCAGTTAGAGAC
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTTCACATTGGCACACGAATTT
TGGAGATATTTTAAATCTGTGCTGCCAGGCCATGTCATTCAAAATGACTC
CAGAATAAAATTTCTCTTATTGCCTTCAAGATAGGAGCTATGGGTTTTGT
ATTGACATTGGTCATCAAACATAGCTGATAGACACAATGTATAAAAAATG
CTTCAAACTGTTAGTTATTAGGAAAATACAAGTTTAAGTCACTGTGATGG
TTTGTACATACTTGGCTCAGGGATTGTCACTATTTGGAGGTATGGCCTTA
TTGGAGTAGATGTGTTTTTGTTGCACCCCCCCCCCCCACTGTGGGCAAGT
CCTAGCTGCCTTGAAGCCAGCCTTCTCCTAACTTCCATCAGATGAAGATG
TCTAACTCTCAGTTCCTCCTGCACCATGCCTGCCTGGATGCTGCCATGCT
CCCATCTTGTTGATAATGGACTGAGGGTAGAATGTTAGTTGCCGAGGGCT
GGGAGTAGAAGGATGAGGAGCTGTTGGCAGTGAAAGTAGAGGGGGAAAAA
GCCAAGTAAAAACCACTGGTCTCTGGAGAAGCCATCCTAGCCTGGCTCCA
GCTGTCCCTGGTACCCACAAACACGGCGCTCAGTGCCATTGGTCCCGTTT
CCTACGTCATTGTTCCATTGTGAGTAGAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_h19.b1 MSMg01no211_h19.b1 CHROMAT_FILE:
MSMg01no211_h19.b1 PHD_FILE: MSMg01no211_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:40 2005
         (320 letters)



>mm_chr10_94206933_94207652
          Length = 720

 Score =  584 bits (302), Expect = e-171
 Identities = 311/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccctatatcctgaatttactactctgtgttttatatgttttgattagaggtggag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattccctatatcctgaatttactactctgtgttttatatgttttgattagaggtggag 459

                                                                       
Query: 65  acactgttgaaatttccctaaattcttatcatgtagacatttaatttttatctgctgaca 124
           |||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 acactgttgaaattttgctcaattcttatcatgtagacatttaatttttatctgctgaca 399

                                                                       
Query: 125 caaatgaggaagaagtccactagttgatttctagtgggatttatactatagaaagttgga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 caaatgaggaagaagtccactagttgatttctagtgggatttatactatagaaagttgga 339

                                                                       
Query: 185 agaattgttagtgatcaacagaaaaaggctttgttgcacttaggaaattggatcccaatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 agaattgttagtgatcaacagaaaaaggctttgttgcacttaggaaattggatcccaatg 279

                                                                       
Query: 245 aaatcaacagaatattaaagatatgaaatagcttgcctaagactacacagttactgacca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aaatcaacagaatattaaagatatgaaatagcttgcctaagactacacagttactgacca 219

                         
Query: 305 gtcaaaacattata 318
           ||||||||||||||
Sbjct: 218 gtcaaaacattata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)