BAC Information

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BAC

Clone NameMSMg01-212K06
Chromosome10 (Build37)
Map Location 104,318,454 - 104,318,763
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573, BC067068, Ccdc59
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212K06.T7 (MSMg01no212_k06.b1)MSMg01-212K06.TJ (MSMg01no212_k06.g1)
ACCAG393919AG393920
length748726
length of high quality
(start - end)
316 (40 - 355)288 (70 - 357)
definitionCHROMAT_FILE: MSMg01no212_k06.b1 PHD_FILE: MSMg01no212_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:27 2005CHROMAT_FILE: MSMg01no212_k06.g1 PHD_FILE: MSMg01no212_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TAGCATTATTTCTATTGGATGACCCTTCCCTCTCTGCTGCTAGGAACCAT
TGTCTACAATCACATGCCATCATATCTTAAACTGACTACAGGAAGGCTTC
CAATGATTCATTTGTTCTCAGAATGTAGCAGAACAAAGTCAATCCCAGTT
GTTAGCCTCCATATTTAAGAAATGTGTTATGTAAGCAGATGCTGCCTGCC
GTGTGATATTGATGAGGATGAGGATGAAGAAGATGATTTCTAATCTTTTC
CAACATTCCTATCTGGCAAAACCCAAACTTCATCTCTAAATAAGTTAGCA
TTCTTATTATCAACACCGCACTCTTTACCATTTCAATTAGGCTATTTAGT
CTGTAAAACCAAAATACCCTTTACCTGGGAGTTCATAGTAAAGGAAACAT
AACATTTAGGAAAATTTCCTTAACTTCCCGAACAATTTTTACATGGGAGG
CTTTAATGGTAATAAAAATGGGGAGGTCCCTTTTTTCTAAATGGGGCACA
CATCTCTCTTTATATGTGGCGCACCTCATTCTACAAGGGGGGGGGGTGAT
ACTTATATTTTTTCTCTTTCTCCTCAATTTGATTTTATATCTTCTCTTTC
TCTCTTTTCTTCGCCTCTTCACCATACCGTAATACTTATTTTCCCCCATA
TCAAATTCTTTTCTACTCATTTACATTTCATTACTTATCCCCTCTTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGC
ACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGGAAATCAAA
ACAACACTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAT
TTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCC
TCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCCGTC
TGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAAT
ACCTCTTCTGGGCATACACCCCCAAGATGTCCCAACCGGTAAGAAGAACA
CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG
AAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTA
CATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTAGCCAAATGGATGGACCTGAAGGGCATCATCCTGACTGAGGTA
ACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATA
TTAGCCCCAAACCTAGGATACCCAAGATATAAGATACATTTTGCTAATCA
CATGAAATTCAAGAAGAATGAAGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_k06.b1 MSMg01no212_k06.b1 CHROMAT_FILE:
MSMg01no212_k06.b1 PHD_FILE: MSMg01no212_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:27 2005
         (316 letters)



>mm_chr10_104318250_104318965
          Length = 716

 Score =  545 bits (282), Expect = e-159
 Identities = 303/310 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttagcattatttctattggatgacccttccctctctgctgctaggaaccattgt 64
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaatacttagcattatttctattggatgacccttccctctctgctgctaggaaccattgt 264

                                                                       
Query: 65  ctacaatcacatgccatcatatcttaaactgactacaggaaggcttccaatgattcattt 124
           ||||||||||| |  |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 265 ctacaatcacacggtatcatatcttaaactgcctacaggaaggcttccaatgattcattt 324

                                                                       
Query: 125 gttctcagaatgtagcagaacaaagtcaatcccagttgttagcctccatatttaagaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttctcagaatgtagcagaacaaagtcaatcccagttgttagcctccatatttaagaaat 384

                                                                       
Query: 185 gtgttatgtaagcagatgctgcctgccgtgtgatattgatgaggatgaggatgaagaaga 244
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 385 gtgttatgtaagcagatgctgcctgccgtgtgatattgatgaggatgatgatgaagaaga 444

                                                                       
Query: 245 tgatttctaatcttttccaacattcctatctggcaaaacccaaacttcatctctaaataa 304
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 445 tgatttctaatcttttccaacatttctatctggcaaaacccaaacttcatctctaaataa 504

                     
Query: 305 gttagcattc 314
           ||||||||||
Sbjct: 505 gttagcattc 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)