BAC Information

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BAC

Clone NameMSMg01-212N02
Chromosome10 (Build37)
Map Location 66,676,581 - 66,676,894
singlet/doubletsinglet
Overlap geneJmjd1c
Upstream geneReep3
Downstream geneNrbf2, Egr2, Gm237, LOC100040081, LOC100039618, Zfp365, Plekhk1, Arid5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212N02.T7 (MSMg01no212_n02.b1)MSMg01-212N02.TJ (MSMg01no212_n02.g1)
ACCAG394035AG394036
length748764
length of high quality
(start - end)
318 (42 - 359)286 (73 - 358)
definitionCHROMAT_FILE: MSMg01no212_n02.b1 PHD_FILE: MSMg01no212_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:41 2005CHROMAT_FILE: MSMg01no212_n02.g1 PHD_FILE: MSMg01no212_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTGTTCACTATTCCTCATTGGCAATGTGATGTGAGTAGCTTTGACTTC
AGCTTCCTTGCCATGAAATGTTAGCAAGAATAATCCTCTTTCTTCTTAAG
TTAGTTTCACCAGGGTATTATAACAGCAGTAAGAAAGGAGACTCAAGACA
GAAACGGAGCAGGTTGTGAAATGTATCAAATCACAGTGGTAGAGTGATTT
CCTAGCTTGGCAGCAATCTCAGGCCTATTGTGTTTGCTTCTCCATGCATT
CCAATAACTGAGGAAACACAGCCTGGTTTACAGTGAGCTCTAGGCAAGCC
TGGGACTGATTGTTAGCTCGCCCCCCCCCAACCAACCAACCAACCAACCA
ACCAACCAACCAACCCAAACCAAAACAAACCAAACCAAAGCAAACCGAAC
CAAACCAACAAACCCCAGCATCTATGCAGGGTACTCATTCACAGATACTG
TGGTCCACACTGAGGTGTTTCGCACTCAGCACACCATCCCTTGAGATTAT
ATATATGTAATGGCCTACATTGCACAAAGTAAACTCAAATTCTGTGAAAC
ATCTGCCTACCAGTGCGTGTGTGCGTGTGCGTGTGTGTGTGTATTGTGTG
ATGCACATATGTGGCTGCTGCCTGGCGGTGCCAGACGGGAGCTTTGTGTC
ACTTGTGACTAAAGACAGAAGGTTGTGAAGTTGCCCTGGAGATGGTGG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAAAGACCACCATTTCATGAACAGAGA
TGCAAAGATCTTCAACAAGAGGCTCGCAGAGTCCACCAATTCATGACTCG
TCGTGGTGCACCGTAACAAAGTGGGACGCCCCAGGTGGGCCAGTCTGTGG
TGGCACCAGAGACATCACTTGAATTAATCTTCATACACCGAGAAGCTAAG
AAAGGAAGACAGTATGGTCCAAACAGGCGAGCAAAACACTTGACAGGTCC
AAGACCAATTCCTTACGACAGTGTTCGATGGACAGGGCTAGAGAAGGGTT
CGGCGGTTGTTTTTTAGCATCCCCCCCCCCACATGGTGAAGAACTAACTG
GGTGCTCTCTTGCTAGGCCAAGGAGAAAGACAGATACCACCATCAGCATT
GCTTTTCAGCAATGAATAGAAAATAGGCCAAAGATCTTAAGAGACACCTT
GCCAAGGAGGAAATACCCAGGACAAATAAAAATGCGAAAAGTACCACACC
CCCATCCGTCGCAGGTTAACGAGGTGCAAGGGGTTGGGTGTTGCATTCTG
CACCTATGATGTTGGCCAGGCTTAAAGTTCTTGCGTCACAGGGTTGGCCG
AAGATTAATACTCCAGGGAAAGCATTTCCCTTGACCCCTGTGCATCGCCA
CGTCCAAAAAATTGATTTCCTCCGGAGTCCAAACCGGTCCCTTTATTTGG
ACGGCCCAATTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_n02.b1 MSMg01no212_n02.b1 CHROMAT_FILE:
MSMg01no212_n02.b1 PHD_FILE: MSMg01no212_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:41 2005
         (318 letters)



>mm_chr10_66676222_66676939
          Length = 718

 Score =  600 bits (310), Expect = e-176
 Identities = 313/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattgttcactattcctcattggcaatgtgatgtgagtagctttgacttcagctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gaattcattgttcactattcctcattggcaatgtgatgtgagtagctttgacttcagctt 614

                                                                       
Query: 65  ccttgccatgaaatgttagcaagaataatcctctttcttcttaagttagtttcaccaggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ccttgccatgaaatgttagcaagaataatcctctttcttcttaagttagtttcaccaggg 554

                                                                       
Query: 125 tattataacagcagtaagaaaggagactcaagacagaaacggagcaggttgtgaaatgta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tattataacagcagtaagaaaggagactcaagacagaaacggagcaggttgtgaaatgta 494

                                                                       
Query: 185 tcaaatcacagtggtagagtgatttcctagcttggcagcaatctcaggcctattgtgttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tcaaatcacagtggtagagtgatttcctagcttggcagcaatctcaggcctattgtgttt 434

                                                                       
Query: 245 gcttctccatgcattccaataactgaggaaacacagcctggtttacagtgagctctaggc 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 433 gcttctccatgcattccaataactgaggaaacacagcctagtttacagtgagctctaggc 374

                         
Query: 305 aagcctgggactga 318
           ||||||||||||||
Sbjct: 373 aagcctgggactga 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)