BAC Information

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BAC

Clone NameMSMg01-213H08
Chromosome10 (Build37)
Map Location 40,526,945 - 40,527,227
singlet/doubletsinglet
Overlap gene9030224M15Rik
Upstream geneRev3l, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo
Downstream geneCdc40, Wasf1, Gpr6, A530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213H08.T7 (MSMg01no213_h08.b1)MSMg01-213H08.TJ (MSMg01no213_h08.g1)
ACCAG394445AG394446
length760714
length of high quality
(start - end)
74 (44 - 117)284 (73 - 356)
definitionCHROMAT_FILE: MSMg01no213_h08.b1 PHD_FILE: MSMg01no213_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:29 2005CHROMAT_FILE: MSMg01no213_h08.g1 PHD_FILE: MSMg01no213_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGAATACAAGTCACCAACCATGAGCACTGCTAAATATATACTGAAAA
AAGTGTGTGTGTGGGGGAGGGCCCCGAGACGACCATGAGAAAGAGAGTCT
CTCTGATCGTTTGGGGCTTATAACTTGTGCAATAGCTCAAGATATTCTAT
GCCCTCCTATAAAGTGCCATCAACCTGTCAATCACAGCGCATACACTTGG
TCCCTGAATCTGCTTTGATCTCAGGCATTTGAATAACATCCCTGGGTTGT
TTTTAACCCTGTATCATTTGTTCTTCTCATTTTGATCACCCCCATAAGTG
TCCCTTTTTTTGAGTAGTTCCCNANGCTTATCCCTTTGCTTGATATATCC
CCTTTGTCTCTTGCTTCTCCCCCCCAAAAAAAAAATGATCTCCGCCCATG
TGGCTCTGATCCCTTCTTTTATATTTTTTTGACCCCCATAGCCTCCGCTA
ATTTCTCCCCAGATATCCTGTTATTGACTCTCTTCCTGCGTTTTTTTCTA
CGACTTTTTTTTTCTTCCCGCCTTTTATTTTCCTTTCCTCTTTCTTTTGC
CTTCTTTTCTCCTTTCCCCTACCTCTTTTTTCCCCCCCCTTTTTCCCCCT
TTCTCCATTCTCTTCTCTTTTTTTTTTCCTCCCCCCTCCCCTCTTATACC
TTTCTCTTCTATTTCTTCTCCCTCTCACTCCCTTCTTATTCCTTCCCTCC
ATACTCCTTT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGGCTATGTGACTCAATACAACACATG
CTGCTCTTTGAATTTTTGGGTGTATTTTGTACCAATGAAGACATTTTATG
AAATTTTGATTAAGCATTTCCTTTGTTAGCTTAATTACCCTTAATCCAGG
AGGAGTCTGTCTAAAACTGCAAAGGTTAAACAAAGCTATAGGAGTGCCAG
GGAACTGAGATGCAGAAAGGGGTGAGCTCATTCCCTCGGGTCCCATTCAT
GAGAATTAATTTAGCCTGGCCCATATTCCCATAGAACCTATCTTCGCTCA
GTTATCTCCTTGTTTAACACCCGCCCCCCCTCACCTTTTCCGTTTGTTTT
GAAACCACTGTCCCACAGCCAGCTTACAGATACTGACTTTCCCAAGGCCT
CTTGTTTTTTGGTCCCAGGAACCCCTAGCATGAGCGCTAAGTCATGTGTT
TCAGGTCTCAGGGTGTTAGGCAAAGCCTAATATTCAGTAATACCGGTTTA
AGTACCTCACCGACCCACATTCACTCCATACCTTCCTGGAACAGAGCCAC
CCTTTCCTTTTGTGGCTTCCTGGAACGGTGATATTCTTTATTGCTTATGA
ACCCCTGTTCAGCTGAATATAAGATGCTTCAGNCGGTACAGTGCCTGCCT
TGCATTATTGAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_h08.g1 MSMg01no213_h08.g1 CHROMAT_FILE:
MSMg01no213_h08.g1 PHD_FILE: MSMg01no213_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:29 2005
         (284 letters)



>mm_chr10_40526745_40527427
          Length = 683

 Score =  513 bits (265), Expect = e-150
 Identities = 280/285 (98%), Gaps = 3/285 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggctatgtgactcaatacaacacatgctgctctttgaatttttgggtgtattt-tgta 59
           |||||||||||||||||||||||||||||||||||||||| |||||||||| ||| || |
Sbjct: 201 ttggctatgtgactcaatacaacacatgctgctctttgaa-ttttgggtgt-tttctgaa 258

                                                                       
Query: 60  ccaatgaagacattttatgaaattttgattaagcatttcctttgttagcttaattaccct 119
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ccaatgaagacattttgtgaaattttgattaagcatttcctttgttagcttaattaccct 318

                                                                       
Query: 120 taatccaggaggagtctgtctaaaactgcaaaggttaaacaaagctataggagtgccagg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 taatccaggaggagtctgtctaaaactgcaaaggttaaacaaagctataggagtgccagg 378

                                                                       
Query: 180 gaactgagatgcagaaaggggtgagctcattccctcgggtcccattcatgagaattaatt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gaactgagatgcagaaaggggtgagctcattccctcgggtcccattcatgagaattaatt 438

                                                        
Query: 240 tagcctggcccatattcccatagaacctatcttcgctcagttatc 284
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tagcctggcccatattcccatagaacctatcttcgctcagttatc 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 683
Length adjustment: 9
Effective length of query: 275
Effective length of database: 674
Effective search space:   185350
Effective search space used:   185350
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)