BAC Information

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BAC

Clone NameMSMg01-213O01
Chromosome10 (Build37)
Map Location 51,483,477 - 51,483,769
singlet/doubletsinglet
Overlap genenone
Upstream geneAscc3, Sim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik
Downstream geneVgll2, Ros1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa, Slc35f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213O01.T7 (MSMg01no213_o01.b1)MSMg01-213O01.TJ (MSMg01no213_o01.g1)
ACCAG394720AG394721
length869762
length of high quality
(start - end)
80 (117 - 196)297 (62 - 358)
definitionCHROMAT_FILE: MSMg01no213_o01.b1 PHD_FILE: MSMg01no213_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:02 2005CHROMAT_FILE: MSMg01no213_o01.g1 PHD_FILE: MSMg01no213_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGGTTTAGAA
TTGTATCTTGACAGCATTTGCAGGATAGTTTGGATCAATTTCTGTTGCTT
GTGTAAGGACCCACCCAGGGCTTCCTATTCTATATTCTCCATCAACCTTA
TGTTGATTTTAGCAAGCACAACAAACGTTGTATTTTTTAGCATTATAAGA
AAAAAGAAAAGAGAAGCGACTTCATGACTTAGGTTAGCACACTGCAAGAA
AGCATTTAAAAAAAAATCAAAAGCTCGCGGAAGCCCTGTTAACTACCCCA
CTCATCTGTCAGGAGTGTGGAGGCTTCTTGTGCGCGGGTGAAGCTTGCCA
GTTTTTTTCGGAAAGCCCCCCCCCTTCTCCCTTAATTAATATTAGTTATA
TATTATAGTGAAATATACTCAAAAATTCATTAAACCTTTATTATCATTTT
CCAGCGTGGTCAAATTCATTAATTTTCACATAACCCTAAAAAATATATAT
ATATAACCACATTCTTTAATTTTTTTAGATACAAATTAAACCTATTACAT
TACATCTATTACTATTTATCATAATTAATATACACAATAAAAATTGATGA
AATATCTACTCTTATCTTTACCCGCCTATTTACATCTTTTTATCACCTAT
ATTCACTTATCTTTACATATGATCGTCTCGTAATATTTTTAATATATAAA
ACCTAAAACCATATACAATCTACACCACTATAATATTCTATCTAATAATA
CCAATTCATTACGTTTAATGACCCCTATCATCCCTACCGCTTATAATAAC
ATATATAATACACATAACCAAACCCTATTCATCCACTAATACACCCTTCC
CCANATCTATCGTTTATCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGTGTTCTTTTTATAATGAAGATGATCAACACCGTGAAA
GGAATTGGAAATACTGAAATTTTAAAAGTTCATAGAAAGACTTTTTAAGG
TACATTAAAACATAAAAGTATATAAAAATTTAAAAACTAAATAAAATACA
TAGAAAGTACTCGAAGCTTGAATAAGCACAAAGAAGAAAAGCACACAGGG
TGAAAAAAAAAGAGTTATGCAAAAAAACAGTTCCTCCTTGAAATTCACAC
TGAATCTTTGTTGAATGCAGACATGCAGGAACCACCACCCCTGCAGACTT
CCTCTTTGTAGGAATGATGGCGAGCGAAAGGCATATTCTCTTGGCCTTTC
TGCCCTTATCATTTAAGGAGTACTGTATTATTCGCTTAAAAAAATCTTTC
CTTTGTTTTTCATTACATTTGATAGCTCTTAGGATTTACCCAGATACTTT
CTGCTTAACTACAATACCCAAAACTATGGTATTAAAGCTTCCCCAAATGA
GTTTTTAAAACGCAGCGTCCGTTTGAAGACCGTATAAAAGAATTGTTAAA
ACAATTGGGTATGAGAAAACCCACTGACAACATTTAATCCTATGGCTTTT
TTTTTTTATTAAAAAAATATAGCTTTGGTATAATTATTTTTTGTTAAAAT
AAGTAATTGGAGTCTCCACCCCCTTGAAAAAGGGGATTTTCCATGGGAGG
GGGGCAAAAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_o01.g1 MSMg01no213_o01.g1 CHROMAT_FILE:
MSMg01no213_o01.g1 PHD_FILE: MSMg01no213_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:02 2005
         (297 letters)



>mm_chr10_51483276_51483973
          Length = 698

 Score =  553 bits (286), Expect = e-162
 Identities = 292/294 (99%), Gaps = 2/294 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgttctttttataatgaagatgatcaacaccgtgaaaggaattggaaatactgaaatt 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 202 tgtgttctttttataatgaagatgatcaacaccg-gaaaggaattggaaatactgaaatt 260

                                                                       
Query: 61  ttaaaagttcatagaaagactttttaaggtacattaaaacataaaagtatataaaaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaaagttcatagaaagactttttaaggtacattaaaacataaaagtatataaaaattt 320

                                                                       
Query: 121 aaaaactaaataaaatacatagaaagtactcgaagcttgaataagcacaaagaagaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaactaaataaaatacatagaaagtactcgaagcttgaataagcacaaagaagaaaag 380

                                                                       
Query: 181 cacacagggtgaaaaaaaaagagttatgcaaaaaaa-cagttcctccttgaaattcacac 239
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 cacacagggtgaaaaaaaaagagttatgcaaaaaaaacagttcctccttgaaattcacac 440

                                                                 
Query: 240 tgaatctttgttgaatgcagacatgcaggaaccaccacccctgcagacttcctc 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaatctttgttgaatgcagacatgcaggaaccaccacccctgcagacttcctc 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 698
Length adjustment: 9
Effective length of query: 288
Effective length of database: 689
Effective search space:   198432
Effective search space used:   198432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)