BAC Information

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BAC

Clone NameMSMg01-213P10
Chromosome10 (Build37)
Map Location 68,204,471 - 68,204,780
singlet/doubletsinglet
Overlap geneTmem26
Upstream geneLOC100039618, Zfp365, Plekhk1, Arid5b, LOC100040136, 1700040L02Rik, EG665342
Downstream geneA930033H14Rik, Rhobtb1, LOC100040182, Cdc2a, LOC100039696, EG382371, Ank3, LOC100039734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213P10.T7 (MSMg01no213_p10.b1)MSMg01-213P10.TJ (MSMg01no213_p10.g1)
ACCAG394781AG394782
length720750
length of high quality
(start - end)
317 (43 - 359)289 (72 - 360)
definitionCHROMAT_FILE: MSMg01no213_p10.b1 PHD_FILE: MSMg01no213_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:08 2005CHROMAT_FILE: MSMg01no213_p10.g1 PHD_FILE: MSMg01no213_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTAAAGATACAGGAGTTAAATCACATTCACAGAGATAGGGAAATAGC
TTGGTGACTAGAAGTGTTTGCTGTCCAAGCATGAGGAGTAGAGTGCAAAT
CCCAACAACCATATGAAAGGTAAGCTCTGATGCATGATCCATGTCCCCAG
AGCAGGCAGGGAGAGAGACAGACACAGGAGAATCGCTGGGGGCTTACTGA
TAGAGTTCAGGGACAGGGTCTTGCCTTGAGGAGAATCAGAAGAGAGTGAC
AGAGAGCATCCTGTGTCTTCCAATCGCTTCTGCAGGAAGAACACAGTTAT
AGATATTANGGTGCCTGCCCANNACANNCCCACACATACTACATACACAC
ATCATGTTCACATTCCCCCATAAAAAATAAATAGTGTGTTGTAGGGACAG
GAGGGTGGATCATAGACAAAGATTACTGTACTTGCTCCAGTTTGGTCAAC
TTGACACAAGCTAGGGTCACCCGAGAAGAGAGAAAGTCAGTGGAGAAAAT
GGCCTTATCAGACTGGCCTATTGAAAAGCTAAGGAGGTATTTTGTTAATG
GATTATTCACGTAGAAGGTCCTGGATCAGGATGGACAAGCCATGGCGAGC
AAGCCAGTAAGCAGCACCCCTCCATGGTCTCTGCTTTAGTGCCTGCCCCA
GGCTCTTGCCTTGTTTGAAT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCATGAAT
GGGTGTTGGATTTGTCAAACGCTTTCTCAGCATCTAACGAGATGATCATG
TAGTTCTTGTCTTTGAGTTTGTTTATATAGTGGGTTATATTGATGGATTT
CCATATATTAAACCATCCCTGCATCCCTGGGATTAAGCCTACTTGGTCGT
GATGGATGATCATTTTATTTTGTTTTTGGATTTGGTTTGCAAGGATTTTA
TTGAGTATTTTTTGCATTGATATTCATAAGGGAAATTGGCCTGATGTTCT
CTTTCTTTGTTGTATCTTCGCCCGCCCTAGGTATCAGAGTAATTATGGCT
TCATACAATGAGCCCCCCCACAAAAAAAACTGTTTCTATTCTGTGGAATA
GTTTGAGCAGAGCTGCTAATTACCTTTTCTTTGCCTGTTGATACAACTCT
GTTCTAAACCCAATCTGTCCCTGCTTTTTATTCCTCGTCTGCTATTCTTT
CGTTGACCTGCTCTTACTTCTCTTTTCTATTTCTGTTTTGCCTTCCTTTT
CCCTCTTCTATTTTTGCTTTCTCCTTTTTTCCCCCGCTTCCCTCCCGTTA
CTTTTTCCTTTTCCTTCCCTTATTCTGCTCCCCTTTATTTTTCGTTCATC
TTTCATCCCGAATCCCTCTTCTCCCCCCCCTTTCTCTTTTTTCTTTTCTN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_p10.b1 MSMg01no213_p10.b1 CHROMAT_FILE:
MSMg01no213_p10.b1 PHD_FILE: MSMg01no213_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:08 2005
         (317 letters)



>mm_chr10_68204064_68204780
          Length = 717

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactaaagatacaggagttaaatcacattcacagagatagggaaatagcttggtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gaattcactaaagatacaggagttaaatcacattcacagagatagggaaatagcttggtg 658

                                                                       
Query: 65  actagaagtgtttgctgtccaagcatgaggagtagagtgcaaatcccaacaaccatatga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 actagaagtgtttgctgtccaagcatgaggagtagagtgcaaatcccaacaaccatatga 598

                                                                       
Query: 125 aaggtaagctctgatgcatgatccatgtccccagagcaggcagggagagagacagacaca 184
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 597 aaggtaagctctgatgcatgattcatgtccccagagcaggcagggagagagacagacaca 538

                                                                       
Query: 185 ggagaatcgctgggggcttactgatagagttcagggacagggtcttgccttgaggagaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ggagaatcgctgggggcttactgatagagttcagggacagggtcttgccttgaggagaat 478

                                                                       
Query: 245 cagaagagagtgacagagagcatcctgtgtcttccaatcgcttctgcaggaagaacacag 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 477 cagaagagagtgacagagagcatcctgtgtcttccattcgcttctgcaggaagaacacag 418

                     
Query: 305 ttatagatat 314
           ||||||||||
Sbjct: 417 ttatagatat 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)