BAC Information

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BAC

Clone NameMSMg01-213P21
Chromosome10 (Build37)
Map Location 80,634,020 - 80,634,342
singlet/doubletsinglet
Overlap genenone
Upstream geneCirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4
Downstream geneEef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213P21.T7 (MSMg01no213_p21.b1)MSMg01-213P21.TJ (MSMg01no213_p21.g1)
ACCAG394800AG394801
length775797
length of high quality
(start - end)		370 (63 - 432)84 (116 - 199)
definitionCHROMAT_FILE: MSMg01no213_p21.b1 PHD_FILE: MSMg01no213_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:10 2005CHROMAT_FILE: MSMg01no213_p21.g1 PHD_FILE: MSMg01no213_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTAGG
TTTCTGGAGTACACATGATCAGAATCTATCTAATGTGATACATTCTTCTT
CTTTTCTTTCCTCCTTGGCCTAAACTGGAATAATCCACCTAATACTGGAC
CTTGAGGAGGAAGACCATCTTTTAGAGACCTTAAAAGAAAGCTTGAAAGA
GACCCTTTTTGTTTGTTTGTTTTGTTTTTCAAGACAGGGTCTCTCTGTGT
AGCCCTGGCTGTCCTGGAACTCACTCTGTAAACCAGGCTGGCCTCGAACC
CAGAAATCTGTCTGCCTCTTCCTTCCAAGCGCTGGGATTAAAGGCGTGCA
TCACCACTCACCACTGCCCAGCTAGATCCTTTTTTTTTTTTTTTTTTTTT
TTTTCCCCCTTTTTTTTTGGATTTTTCCAGACTGGGCTTTTCTGTGTTCC
TCCGCCTGCTCCGTTCCCTCCTCCTGATATTTATTTTGCTCCCCACCCTC
ATACTCCCTTTGCCCCCCCGTTTTTTCTTTCCCCCTCTTTACATGCGTTT
CCCCCTCTCTCTCCCCTTCCTTTCTCTTTTTTTTCCCCCCCCCCCCCTTT
TTATTTTTATTCCCGATCTACCCCCTCTTCCATTTGATTATTTTCTTCCT
TTTTGTTTCTTTTATCTCCCTTCTCCTTCCCTTACCCTTTACCCCTTTCA
TTTTGTCTTTTCTCCCCCTTTTCTCCCCCCTTCTACACCTTCTTCTTTTT
TCTTTCCCGCCTCCCTCCCTTTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAGAGCCATCGCTGAACCAGGTGAGAGGCTGGCAA
CCGGACTGTCACCCTCAGGGCTTCCTCACTTGCAGGCGCCATGCTGAACC
AGGCAGGAAACAGAGATGATATAGGTGGTTGTTGGGGGAAGGAGATCCCC
NCAGTCTATGTTTGCCACGCGGCTTCTTGAGAGGCAGCTTAGCTATCAGC
TCCCGGCCACATACTACTCTAAAGGTCCGGTTACGTGCTCAGTCCTGCCG
ACCCTTCTATTTTTTCCCATCACCCCCGCCCCGTTGTTACCCCCCCTTTT
TGTGTTTTTCCCCCCCCCCCCCCCCAGGGATTTTAATTGTTTTTTTGTTC
CGTTTTTCCCCCCCCCAAAAAAAAAAAAAACCTCTTTCGGGGCGCGCTTT
TCCCTTTCCCCCCCTTTCCCTTTCTGTTTTCCCTCCCTTTTTCTCCCCTC
CCCCTTCCCTTTCTTTGCTCCCCGTTCCCCTTTTTCCCCCCCTCCCTCCT
TTTTCCTTCCCCCCTTTTTTTTCCCCCCCCCCGGCCCTTTCCTTCCTTTT
CCCCTCTTTTCTCCCTCCCTCTCTACTCCCCTCTTTACTCCCTTGCCCCC
CCTCCTTTACTTTTTTCCGCCTCCTCCTTCTCTTTTCCCCCCCCTTACAC
CCTTTCTTCCCCCTCGTTTTCCCCTCTACCCTTTTCCTATTTTCCCGCGC
TCGTCCCCCGCTCTCCCCTATCCCTTCTGCCCCCCTTTCCTTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_p21.b1 MSMg01no213_p21.b1 CHROMAT_FILE:
MSMg01no213_p21.b1 PHD_FILE: MSMg01no213_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:10 2005
         (370 letters)



>mm_chr10_80633820_80634589
          Length = 770

 Score =  592 bits (306), Expect = e-173
 Identities = 321/330 (97%), Gaps = 7/330 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatgatcagaatctatctaatgtgatacattcttcttcttttctttcctccttggccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatgatcagaatctatctaatgtgatacattcttcttcttttctttcctccttggccta 260

                                                                       
Query: 61  aactggaataatccacctaatactggaccttgaggaggaagaccatcttttagagacctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactggaataatccacctaatactggaccttgaggaggaagaccatcttttagagacctt 320

                                                                       
Query: 121 aaaagaaagcttgaaagagaccctttttgtttgtttgttttgtttttcaagacagggtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaagaaagcttgaaagagaccctttttgtttgtttgttttgtttttcaagacagggtct 380

                                                                       
Query: 181 ctctgtgtagccctggctgtcctggaactcactctgtaaaccaggctggcctcgaaccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctgtgtagccctggctgtcctggaactcactctgtaaaccaggctggcctcgaaccca 440

                                                                       
Query: 241 gaaatctgtctgcctcttccttccaagcgctgggattaaaggcgtgcatcaccactcacc 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 441 gaaatctgcctgcctcttccttccaagcgctgggattaaaggcgtgcatcaccact---- 496

                                         
Query: 301 actgcccagctagatccttttttttttttt 330
              |||| ||||||||||||||||||||||
Sbjct: 497 ---gcccggctagatccttttttttttttt 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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