BAC Information

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BAC

Clone NameMSMg01-214B12
Chromosome10 (Build37)
Map Location 37,879,272 - 37,879,504
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214B12.T7 (MSMg01no214_b12.b1)MSMg01-214B12.TJ (MSMg01no214_b12.g1)
ACCAG394864AG394865
length734673
length of high quality
(start - end)
237 (125 - 361)250 (2 - 251)
definitionCHROMAT_FILE: MSMg01no214_b12.b1 PHD_FILE: MSMg01no214_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:18 2005CHROMAT_FILE: MSMg01no214_b12.g1 PHD_FILE: MSMg01no214_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:18 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCAGTACATCACTTTTAGCAGCATAAATCATGGCCATTATTGTA
GTGCTAGGGTATTCTCATACGCCAATGTCACACCTCTTTGGTAAAAGATG
ATTATTGATATTCTGTATATATTAATAAATGCTGGAAATTAATATGGTGG
CAGTTATTCCTTATCCAGTTAGTTTCCCCAAGAAAACACATGCAGAAACT
TTTTAATATTTTAAAGCTTAGGTCTTAGCTAGGCAGACTCTGAACTAACT
TATCTAGCTTAGCTTGATCTTACAGACCAATCCAGGCAGGTGGCTTGCTA
TACCTTGTTTTTCTGTAACCCCGCATCGCCTTCTCTTTCTCATGGTGAAA
AAGCCTTTCTTTTCCTTCTTTCCATAACTTTTTTCTCCCTCCCAGGAAGA
CCTACCTATCTCTCTCTACTGCCTAATTACAGGCTTCAGCATTTTATTGG
CCAATTAACTTGGGGAACAAGGTTCAGACAACAAAAGCTGGTGTATTTGA
GAATTTGCTCTTACAGCAACCAGATCTAAGGGTACAGAATAAATTTGAAA
CCATAAGCAGTACCAGACCAAACCTAACATTCCCTCTATGCTTATTGAGC
TGCATATAGATAAGCAAAGATATTAAAAACAAATTTCAAGATAGAAAATA
ACAATCATAAATTGTCTAGGATTTCTATGTCTCC
ATCCGCGGAATTCTTTTGAAATCTTGCTAAATATGCCCATGATAGGTTCC
CATGAGAATATATTTATAAGTATTGGAAGTTGACAGTGAGCAAGGGTCAT
AGGAGTGAGGGGCTGCAGTAGTCCACCATAGGAGGTAGAAAGCAATGTAT
TTTTTTTATCATCAGAATTTGTTTAGTCCCCTGAGAATGAAGTGAAATGT
GAGGAAAGTCCACAACAAGTATTCTAATCCAGAGTTAGGAATGAGATTGG
GGGAGTAGATATTGAAAACAGGAGGAAGAGTCAAGATCCAAAGCTGGCTT
ACTTGCCNTGCTGGCCCATTGCCTTCCTTGTCAATCTTGGTTGATGTGTT
GCCAGTAAAAAAAAAAAGAACTTGGTGTCCAGGAATATGGTATGACTGGT
GAGAAAGATTTGAGGAATTCTGTGCAATCCTCTGGAGTCACGTGCAGATA
AGAGGGGGAAGTCACAGCATGTTATCTGCTACAGAGCATGTCATATGGCT
GGCAGATTGGATTTGAGTAGTAGAGGTAAAGGACTGCATATAGCCTACTT
GCCTCCCTGGCATAATCACTAATCTCTTATTTCTAAGGATGAGAATTTGA
GATTCAGATAACTAAGTCTCTTTCTCAGTTCTCACAAATTAGTATTTTTG
CCATCCCATCTCTGCAATATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_b12.b1 MSMg01no214_b12.b1 CHROMAT_FILE:
MSMg01no214_b12.b1 PHD_FILE: MSMg01no214_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:18 2005
         (237 letters)



>mm_chr10_37879072_37879708
          Length = 637

 Score =  427 bits (221), Expect = e-124
 Identities = 230/233 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtcacacctctttggtaaaagatgattattgatattctgtatatattaataaatgctg 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 atgtcacacctcttcggtaaaagatgattattgatattctgtatatattaataaatgctg 374

                                                                       
Query: 61  gaaattaatatggtggcagttattccttatccagttagtttccccaagaaaacacatgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gaaattaatatggtggcagttattccttatccagttagtttccccaagaaaacacatgca 314

                                                                       
Query: 121 gaaactttttaatattttaaagcttaggtcttagctaggcagactctgaactaacttatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gaaactttttaatattttaaagcttaggtcttagctaggcagactctgaactaacttatc 254

                                                                
Query: 181 tagcttagcttgatcttacagaccaatccaggcaggtggcttgctataccttg 233
           ||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 253 tagcttagcttgaccatacagaccaatccaggcaggtggcttgctataccttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)