BAC Information

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BAC

Clone NameMSMg01-215N08
Chromosome10 (Build37)
Map Location 120,986,285 - 120,986,519
singlet/doubletsinglet
Overlap geneTbk1
Upstream geneLOC100042902, Msrb3, LOC100043488, Lemd3, Wif1, LOC100042911, 4930505D03Rik, LOC100043498, Gns, Rassf3, LOC100043500
Downstream geneXpot, D930020B18Rik, BC048403, Srgap1, EG216394, LOC668272, Tmem5, LOC100043513, LOC668275, Avpr1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215N08.T7 (MSMg01no215_n08.b1)MSMg01-215N08.TJ (MSMg01no215_n08.g1)
ACCAG395939AG395940
length709720
length of high quality
(start - end)
285 (122 - 406)91 (161 - 251)
definitionCHROMAT_FILE: MSMg01no215_n08.b1 PHD_FILE: MSMg01no215_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:36 2005CHROMAT_FILE: MSMg01no215_n08.g1 PHD_FILE: MSMg01no215_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TAAGCTGCTGACCCCCAAAAAGTAGTGTCAATCCATCTGTCTGATGAGAA
GGCGAGGGCCCTGGTCCCGCCTCTGTACCAGCATTGCTGCCATCTGCTCC
CCAGAGTAACACTGTGTGCAGAGACCCCACTCTCTCCCCTCTCTGTGAGC
ACTCTGGGCTCTGTATTTCAGCCTAGAAACCTTAACCCCTCACTAAAACA
AAACAAAAAAAGCTCCAGGGTTTTTTGCTTTTTTTTTCATGTATTTCTTC
ACTTTATATCCCAATATCTGCCCCCTCCTCTCAGACCCCACTTCCCTTCT
CTGAGATTTTGTTTCCCCCCCCCCCCCCCCCCCTACTCTGTCACATCTCC
CACTGAGACCAGACACACCCACCTAAATAGACTAACATATTCCGCAGACA
GGCAAGAGCTTTATAGACAGCCCCCACTCCCATTGTTGTTTTACCTGCAA
GGAGACCAAGCTGCACATCTGCTCCATGTGTGTGGCGACCTAGGCCAGCC
TGTGCACGTTCTCTGGTTGCCTGTCCACTCCCCGACATCTACCACTGTTC
CATTGCCATTCTTTCCTTTTGTTTCTCTATCTTTCTCAGGTTTCCCCTTC
CTTCCCTCATCTCTCCCCCAATATTCCCTCTGTTCCCTCTAATGTGTGCC
TGCTCCTTT
AGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAACTTTTCAGCTGGGGGAACAGAG
TACCTGTGAGTACAGCTTTACCAGGTAAGTCTGGTCTTGAACTTTCTAAG
GAAATTCAAGACAGTCTATCAGAAGTAAAGTGGAAAATAGCTTTACAAGG
TACGCCTGGCCTTGAACTTTCTAACGAAATTCAAGACAGTCTATCATAAG
TAAAGTGGAAAATAGCTTTACAAGGTATGTTTGGCCTTGAACTTTCTCTA
GTGTTAGAAGCCCTTTTGTTCCTTTTCACATGTTATCAAGTGGTTAAGGC
AGGTCAGATTTTGTTTTATATTCCCCACCCCCCACTCAGAAGTAAAGCGG
GGAGAGAGAGTATGAGCTTTGACAACACATGGTACACATACATACGTATA
CAGGCCTTTCCATGGTTCTTGAACCCCATGAAAAGTTTAGGTCAGGTAAG
AACACCTGTGTAGACATTGGAAGGAAGGAGAAGGATAAAGAAAAGAATAC
ATATTCATTATTTTGAGGTTTCTATGGACAAGGAGCCTCTACCTCTTTCT
AGACGATTTCCTGGAGTCAGTTCTTATTAGTTCTGAATCATATGATAAGG
CTATTATGCTCTTGAAATGCGCCCTCCCGATCAGGTGAAGCCTCTGGATA
ATAATGTTTTATGCACGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_n08.b1 MSMg01no215_n08.b1 CHROMAT_FILE:
MSMg01no215_n08.b1 PHD_FILE: MSMg01no215_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:36 2005
         (285 letters)



>mm_chr10_120986085_120986769
          Length = 685

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtaccagcattgctgccatctgctccccagagtaacactgtgtgcagagaccccact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tctgtaccagcattgctgccatctgctccccagagtaacactgtgtgcagagaccccact 376

                                                                       
Query: 61  ctctcccctctctgtgagcactctgggctctgtatttcagcctagaaaccttaacccctc 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 375 ctctcccctctctgtgagcactctgggctctatatttcagcctagaaaccttaacccctc 316

                                                                       
Query: 121 actaaaacaaaacaaaaaaagctccagggttttttgctttttttttcatgtatttcttca 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 315 actaaaacaaaacaaaaaaagctccagggttttttgttttttttttcatgtatttcttca 256

                                                                  
Query: 181 ctttatatcccaatatctgccccctcctctcagaccccacttcccttctctgaga 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ctttatatcccaatatctgccccctcctctcagaccccacttcccttctctgaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)