BAC Information

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BAC

Clone NameMSMg01-217I12
Chromosome10 (Build37)
Map Location 78,154,439 - 78,154,756
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890
Downstream geneCasp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217I12.T7 (MSMg01no217_i12.b1)MSMg01-217I12.TJ (MSMg01no217_i12.g1)
ACCAG397030AG397031
length1,328769
length of high quality
(start - end)
319 (124 - 442)74 (134 - 207)
definitionCHROMAT_FILE: MSMg01no217_i12.b1 PHD_FILE: MSMg01no217_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:08 2005CHROMAT_FILE: MSMg01no217_i12.g1 PHD_FILE: MSMg01no217_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTGCTATGGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCATC
CTGCTCTATTGAGGTATTAGTGGGAAAGCACTGGGTGGGAAACATTGGCC
AGGGAGGCTCGAAGTCAGTCCCCCCATCTGTCTTCACCCAAGAATCTGCC
CAGAGGAGCAGCTGCCTTAACAAGTTCAATCCACATTCCCACACGTGTGA
ATATACCACCTTCACACACCATACTCACACACCAAACCACATGATACCCA
CAGATAGAGACAGGTATCACTTGAAAATTAAAACCTTTATAAAGCAGTTT
GTTGAAAAGCCAAAACAAAAACAAGGCTAGATTGTATATTTGTTTTTTAC
TTTCATTAATGTAATACACATATTTTTGGGGATTAATATTCCCTAGGCTG
TTTGACAGTTTATCTTGATACAATATCATTGGAACCCTAAGCCCCAGGAT
TTTTTTTTCCCCCCCCCCCCCCAAATTAAGTCTATTTACAAAAAAAAAGG
AGGGGTTAATCATAAGTTTCTGGTAAATGACAAATTCATTTGCATAGATT
GGATTCTCTGGGTCTATTACTCTGCTTTGCAATTAAGGATGCTTAAGCCC
TCAGGCAATTAGGATTAAACATAGGAAACAAAACACAATAACCTATTCTA
TATTTTATGACTGATCCAAAAGAGAGGAGCTTAAAGGCTCCAAGAAATGA
CTAGGAGCAAGTTCAGGGTGTGTGTCAGTGCTAGCACAATTACCCAGCAT
GTGCGAGGTCTTGTAATCCATCCTCTAATTTGTTTATATATAGTTAAGCT
GGTATCATTTACTCTTTCTCTCCTATTTTTTCTTATTCATTCTATTTCAT
CAACTACTTTCCCATTCTTTTTCATCTTTTTCTTTTTTCATTTCTTAATT
CCTCACTCCTTCTTACTATAATCTTATTCTTTCTATTCCTATTACTTTCT
CTTCTTCTACTTATCTCTATCTTCTTTCTTTAATTATATTTTCCTTTTCC
TTTTTCTACTATGCTTCTCTTCATAACTTTATATCTCTTTATTTTTTCTT
CTTTCTCTCACATTCTTTCCTCTTATCTTATCTTTCTTCTTTTTTATATT
TATCTCTCTTTTCTTCCTCTTACCACCTTTTCCCTCTCTCTTCTCTTTAT
TCTCCATTCTATATATCTTATATTCTATCCATCCCGCTTTACTTATTTCT
TTTTCTTTATTTTTTTTTTCAACTACATGATCTTCTATTCTTTATATATA
TCTTTCTAATCTCTATATACATTTCCATAAAGTACCTACATGTATCCAAT
ACATCATACATCTCTTACACATTCTTTG
AACGATGAAGCGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGATCTGCCTGTCACCACCT
GAATTTCGCACCATATGTTTTGGGCCCACTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCGGTTTTTCG
AGACAGGGTTTCTCTGTATAGCCCTGGTCTGTTCTGGAGTTCATTTTGTA
GACCAGGCTGGTCTCGAAATCAGAAATCCGCCTGCCTCTGCCTCCCGAGT
GCTGTCATAAAAGTCATGTGTTTTTTTTGCCCGGCTTCCTTTTCTCCCTA
CATCCAGGGTTTTTGATAGTTTACCCCCCCCCCCCCCGCTATGGTTAGTT
GATTCCACATTTTCTTTCTCGTTTTGACCCCAAAAAAAAAAAAAAATTTT
TGGGGGGGGGGCGGGGCTTACTTCCCTTATCGATGCTTTGTACCTTGACG
GTGCGTCTTACCATAACTCTCGTTTTTTGAACCCATTGTGTCTCCCTATT
TTGAGGCGAGGCGGGTAATACCCCGGCCTATGATTACTACGTCGCCGCCC
TTCCTCTGCTGACGTTGGCATTTCTGATCTTAACGCTGACCTTTGTGTTT
CGCATTTATGCGAGGAAATCTCTGCAGGCTATTCACTCGTTACCGCTCTT
CGTTTCTCCACCCCTTATACCTTAATATTCAACGTTACATCGCCGACGCC
GCACCCATTACCTATCGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_i12.b1 MSMg01no217_i12.b1 CHROMAT_FILE:
MSMg01no217_i12.b1 PHD_FILE: MSMg01no217_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:08 2005
         (319 letters)



>mm_chr10_78154238_78154956
          Length = 719

 Score =  584 bits (302), Expect = e-171
 Identities = 314/318 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   catctgtcttcacccaagaatctgcccagaggagcagctgccttaacaagttcaatccac 61
           |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 202 catctgtcttcacccaagaatctgcccaaaggagcagctgcctcaacaagttcaatccac 261

                                                                       
Query: 62  attcccacacgtgtgaatataccaccttcacacaccatactcacacaccaaaccacatga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 attcccacacgtgtgaatataccaccttcacacaccatactcacacaccaaaccacatga 321

                                                                       
Query: 122 tacccacagatagagacaggtatcacttgaaaattaaaacctttataaagcagtttgttg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tacccacagatagagacaggtatcacttgaaaattaaaacctttataaagcagtttgttg 381

                                                                       
Query: 182 aaaagccaaaacaaaaacaaggctagattgtatatttgttttttactttcattaatgtaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaaagccaaaacaaaaacaaggctagattgtatatttgttttttactttcattaatgtaa 441

                                                                       
Query: 242 tacacatatttttggggattaatattccctaggctgtttgacagtttatcttgatacaat 301
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 442 tacacatatttttggggattaatattccctaggctgagtgacagtttatcttgatacaat 501

                             
Query: 302 atcattggaaccctaagc 319
           ||||||||||||||||||
Sbjct: 502 atcattggaaccctaagc 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)