BAC Information

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BAC

Clone NameMSMg01-218F06
Chromosome10 (Build37)
Map Location 35,557,109 - 35,557,394
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667824, LOC100041585
Downstream geneLOC667860, Hs3st5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218F06.T7 (MSMg01no218_f06.b1)MSMg01-218F06.TJ (MSMg01no218_f06.g1)
ACCAG397538AG397539
length734712
length of high quality
(start - end)
278 (40 - 317)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no218_f06.b1 PHD_FILE: MSMg01no218_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:18 2005CHROMAT_FILE: MSMg01no218_f06.g1 PHD_FILE: MSMg01no218_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:18 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TTGTTTTTAATTGTTGAGTAGTACTCCATTATGTAAATGTTCCACATTTT
CTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTTTTTTTTCCAGCTTC
TGGCTACTATAAATAAGGCTGCTATAAACATAATGGAGTATGTGTCCTTA
TTATAGGTTTGAACATCTTCTGGGTGTATCAATAAGACAAAAAGGCCACC
AACAGATTGGGGAAGGATCTTTACCAATCCTAAATCAGATAGGGGACTAA
TATCCAATATATATAGAGAACTCAAGAAGATGAACTCCAGAAAATCAAAT
AACCCCTTTATTATTTCTCGCCGAACAGACCTAAAAAAAAAAAAAAAAAA
AAAAACTCTCACCTGACCAACACCAAATAGAAAAAAAAACCCCCTGGAAA
AAAGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTG
AGATTCCACCTCCTACCAGTCAAAAGGGCTAATAACCAAAATTCTGGTGA
ACGCAAACCCCGCCGAGGATGTGTAAAAAGAGTAAATTGCCTTCTTCGTT
GGTTGCGATGAACCCTGGTACATCCCTCTTGAAAAACTTAACTCGTGGTT
CCTCCAAAATTTGCAATAACGTACAATCGCTGCTTTTTCCCAGGGGTTTT
GGAAAACCCTTTCTAATTTCCTTAAGCCCCCTTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAAACTGATTTTGTAATGATTTC
AAAAGCTGACTTTATTCCCCTAAAACAAATATCTAAGTACCATAAAATTC
AGGAGAAAAAATTCTATGGGTACTGGTTCTAAATTTAAAAAATAAATTAT
CCATTTTTAGAAAAATCTAAGAAGGTAGCTCAGGCAGATGACCTCAGTGG
CAGTGATTGGGAAGATTTGGATGAGGCAGATGCTCTTTATCCTGATTGGC
CTCATTTCCAAAGACCACAACCTCCTTATGCCCATATTTCGACGGCCACT
GGCCAGCACAAGATTCAGCTTCACTTCAAAAGAACCAAAACCTCAGAGAC
CAAATTCAACTTGAAAATGAGCACCATGAGCTTCTTAAGCAACTCTAATA
GCTCCACTTGCCACTCCAGGCCACCACTTCCCCACAGGAACCTCTGTCAC
TCCCTGTGTTCCCAGGTGATGAGACTGCTGGAGATGCAAAGATAGTTCCT
ATCTGCCATCATGGGACATTTGAGATGACTGTGGCTTAAGAATTAAAAAA
CAAAAGTTTCTTCAATAAGGGGGCCTCCGCTTCCTTAAACGTTAACCTGG
GTGAAACTGGTTGGCCTAAAAAAGGGGAAAACCCCCTATTTTCAAAACCA
CACTTTCTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_f06.g1 MSMg01no218_f06.g1 CHROMAT_FILE:
MSMg01no218_f06.g1 PHD_FILE: MSMg01no218_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:18 2005
         (286 letters)



>mm_chr10_35556785_35557470
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaactgattttgtaatgatttcaaaagctgactttattcccctaaaacaaatatctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aaaaactgattttgtaatgatttcaaaagctgactttattcccctaaaacaaatatctaa 551

                                                                       
Query: 61  gtaccataaaattcaggagaaaaaattctatgggtactggttctaaatttaaaaaataaa 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 550 gtaccataaaattcaggagaaaaaattctatgggcactggttctaaatttaaaaaataaa 491

                                                                       
Query: 121 ttatccatttttagaaaaatctaagaaggtagctcaggcagatgacctcagtggcagtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ttatccatttttagaaaaatctaagaaggtagctcaggcagatgacctcagtggcagtga 431

                                                                       
Query: 181 ttgggaagatttggatgaggcagatgctctttatcctgattggcctcatttccaaagacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttgggaagatttggatgaggcagatgctctttatcctgattggcctcatttccaaagacc 371

                                                         
Query: 241 acaacctccttatgcccatatttcgacggccactggccagcacaag 286
           ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 370 acaacctccttatgcccatatttcgacggcccctggccagcacaag 325


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)