BAC Information

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BAC

Clone NameMSMg01-218G20
Chromosome10 (Build37)
Map Location 103,244,291 - 103,244,568
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382413, Cart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
Downstream geneEG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218G20.T7 (MSMg01no218_g20.b1)MSMg01-218G20.TJ (MSMg01no218_g20.g1)
ACCAG397601AG397602
length755724
length of high quality
(start - end)
305 (441 - 745)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no218_g20.b1 PHD_FILE: MSMg01no218_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:26 2005CHROMAT_FILE: MSMg01no218_g20.g1 PHD_FILE: MSMg01no218_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATGAAATTTTCCCGCAAATGAATAGAACTAGAAAATATCATCT
TGAGAGGAGAACTCAATCACCTTAGGACCCACATGGTGTGCACTCACTGA
TAAATGGATATTAGCCCAAAAGCTCCAAATAACCAGGATACAATTCACAG
ACCACATGAAGCTCAATAAGAAGGAAGAACAATTTGTGGGTGATTTGGTC
CTTTTTAGGAGGAAAGCAATATACAGGAGAAAATATGGAGTTAAAATATA
GAGCAGAGACTGAAGGAAAGGCCACCCATATACTATCCCACGTGGGGATT
TATACCATATACAGTGTCCTAATTCCCACACCACTGCGGATGCCCCGAAG
TGCATACTGAAAGGAGCCTTATATGACTGTCACACAACAAAGGCCCAGCC
AGAGTGTTACAAATTCAGAGGCAGATGCTCACAACCAACTGTTGGAGTGA
GCGCAGGGTCCCCAATAGAGGAGTTATAGAAAGTACTGAAGGAGTTGAAG
GCGTTTTCAACCCCTTAGGAAGAACAACAATATCAACCGACCAACTTCTC
CCACCTCCAGCTACAAGGGACTAAGCCATCAACAAAGGAGTACACATGGC
TCCAGCTGCATATGTAGCAGATGATGACCTTGTCATGCATCAATGGGAGG
AGAGGTTTTTGGTCCTATGAAGGCTCGATAGATGACCCAGTGTAGGAGAA
TGAAC
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGAAAAAAAATATTGTGTTAACTAT
GTACATAGAATTCTACTGCCTATACTTACATTAAATGAATGGATTACTGT
CAGTTTGCATACCTTACATATATAATGGATCATAATTACAATTTCAATCT
AGATGGAAATTCTTATTAATTTACGTATGACCTTAGCAGGGTCAAAAATG
ATGCACTTGAAGCGTTTTGTTCTTTAAGAATTCAATCTAGTCACAGAAAT
AAACAACTTGAAATGCAAATTTAATTATATACAGTTTGTCCATACTCTAT
ACAATTACTATNAATGCNTACACTATTCCATNCTCTTTCAAAAAGCAAAT
ATTGTATCTTTTATGAACTCATTAATTATAAAAAAAATAACAATCATTTT
ATTAATTTGTACTTTCCCAGGCTGTCAAAATATAAACATCCAGCCCATAT
ACAAATATATAACCTAAAATATCTAGATAAAAGAATTTCAAATGTTAAGA
CATTAGCATTCCATTCATGAGGAGTGTCTTAAGTCAGGGTTTCTATTACT
GCAGAAACATCATGGCCAAGAAGCAGTTGGGGAGGAAAGGGTTTATTCAG
CTTACACTTTCACATTGCTGTTCATCACCAAGGAAGTCAGGACTGGAACT
CAAGCAGGTCAAGAAGCAGGAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_g20.g1 MSMg01no218_g20.g1 CHROMAT_FILE:
MSMg01no218_g20.g1 PHD_FILE: MSMg01no218_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:26 2005
         (289 letters)



>mm_chr10_103244087_103244771
          Length = 685

 Score =  451 bits (233), Expect = e-131
 Identities = 269/283 (95%), Gaps = 7/283 (2%)
 Strand = Plus / Minus

                                                                       
Query: 6   aaaaaa-tattgtgttaactatgtacataga-attctactgcctatacttacattaaatg 63
           |||||| |||||||||| ||||||||||| | ||||||||||||||| ||||||||||||
Sbjct: 482 aaaaaattattgtgttatctatgtacata-acattctactgcctatatttacattaaatg 424

                                                                       
Query: 64  aatggattactgtcagtttgcataccttacatatataatggatcataattacaatttcaa 123
           |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 423 aatggattaccgtcagtttgcataccttacatatataatgggtcataattacaatttcaa 364

                                                                       
Query: 124 tctagatggaaattcttattaatttacgtatgaccttagcagggtcaaaaatgatgcact 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tctagatggaaattcttattaatttacgtatgaccttagcagggtcaaaaatgatgcact 304

                                                                       
Query: 184 tgaagcgttttgttctttaagaattcaatctagtcacagaaataaacaacttgaaatgca 243
           |||||| |||||||    ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgaagcattttgtt----aagaattcaatctagtcacagaaataaacaacttgaaatgca 248

                                                      
Query: 244 aatttaattatatacagtttgtccatactctatacaattacta 286
           ||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 247 aatttaagtatatacattttgtccatactctatacaattacta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 685
Length adjustment: 9
Effective length of query: 280
Effective length of database: 676
Effective search space:   189280
Effective search space used:   189280
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)