CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTAGCATTCTCAAATATGAAAAGAAAATTTTCTTTACCAATACC
CGTACCTGTACAGAAAAGTATTCGCCATTTCTTTATTGCAGTTGTTCTAG
ACCTTTTTCTTAGATATATATGCAGAAACAGCATATAGACTCATGTAATC
ACAACACTGCATCCCATTCTTTAGGCAAAAGGAACAGCTAGACAAACTGG
AAACAAATTGGACAGTTAATATGTTCTTTCTTACTGACTGAACTTAATAA
CAAGCAAATACTAACTACAGTGGCTACTGGAAACCAACCCTTACAAAGTG
ATATAGAAGGATACCTCGCAACAAGGCCTTTCTGGTGAGATTTCACCCTC
TTTCCCTGTATAAGCCTGCCAGGAAATAATAGCCAAGGACACAGTCTTAG
AACCTTACAGCAGGAGCCATCTTGCCACTGGACCCAAGTCTACATCCTAT
TGTGATGCCAGGCACAGAGCTACAGTTAAATGCTTAAGTTTTTGAGAGCT
ATTAGATAATGACTTTGACATAATGAAATAACCAAATATCAAAATGAATG
AAATAAATGTTTAGAAAACAATGAAATTTAGTGAGTATTGATATTAACTG
ACTTCTGGGAGCATTAACAAATTTACCAAGAATTATGTAACTCATATAAA
AAGATATTAAGCATATGANATAATCTTAAGAGTTTCTGCAGAATN

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAAACATGGGAACTAAAATGTACAT
TTTGCCAATGAACTGGGAGAATAAGGCACCTTTGCTTTGGAAGACTGACC
CTCTCCAAGTACCTTCTCGGCACTGCTGAGGAGGACAGCCTCTGCTGTTG
GGATCTGCTCAGTTGTTCAATATAGTGGAGTGCAAAATTAAATGTTAGCG
TTCTGGAACCCGACCCTTACTCAGACCATGTTGCTGCAGTGGCAGAGTCT
TCAGTGGGCTCAGATCTGTTTGTATTTAAACCTAGCAAGCCAAGGCTATT
GTATATTCAAAATATTGTCTCCCCCACCCCCACCCCCAGTGGGGAGTGTT
TGTTCCATGAGATGTCCCAGAATCGTTCCCCTCAGAAGCTCACCAGTAGC
TGAACAGATCTCAGTTTTACCTCCTAACTAAAAGCACAGTGCTTATTAAC
ATCACAAAGTCTCCCGAAGAGAAACTCACACCAACAAGCAGATGGCTGCT
GGCAGAAGAAAGTTTGCCAACGACCCCATTTCCTTTTATATTGGGAAAAG
GCAGGCAACAGCAGGATGCAAAGTTAACTGAAACTTCACAGGATGAACAA
CTCCCCTTAACAGAGACCATACCTGCAGTTACTAAGATTCTTCACACCCC
AGCTCGCGTACTGCCATCAGCTTCGCTCCTCTGTTCTCTGTTTGTAAC

Query= MSMg01no231_e16.b1 MSMg01no231_e16.b1 CHROMAT_FILE:
MSMg01no231_e16.b1 PHD_FILE: MSMg01no231_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:32 2005
         (700 letters)



>mm_chr10_87588813_87589912
          Length = 1100

 Score = 1268 bits (656), Expect = 0.0
 Identities = 685/695 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactagcattctcaaatatgaaaagaaaattttctttaccaatacccgtacctgt 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactagcaggctcaaatatgaaaagaaaattttctttaccaatacccgtacctgt 264

                                                                       
Query: 65  acagaaaagtattcgccatttctttattgcagttgttctagacctttttcttagatatat 124
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acagaaaagtattcgttatttctttattgcagttgttctagacctttttcttagatatat 324

                                                                       
Query: 125 atgcagaaacagcatatagactcatgtaatcacaacactgcatcccattctttaggcaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgcagaaacagcatatagactcatgtaatcacaacactgcatcccattctttaggcaaa 384

                                                                       
Query: 185 aggaacagctagacaaactggaaacaaattggacagttaatatgttctttcttactgact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggaacagctagacaaactggaaacaaattggacagttaatatgttctttcttactgact 444

                                                                       
Query: 245 gaacttaataacaagcaaatactaactacagtggctactggaaaccaacccttacaaagt 304
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 445 gaacttaataacaagcaaatactaactacagtggctactggaaactgacccttacaaagt 504

                                                                       
Query: 305 gatatagaaggatacctcgcaacaaggcctttctggtgagatttcaccctctttccctgt 364
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatataaaaggatacctcgcaacaaggcctttctggtgagatttcaccctctttccctgt 564

                                                                       
Query: 365 ataagcctgccaggaaataatagccaaggacacagtcttagaaccttacagcaggagcca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ataagcctgccaggaaataatagccaaggacacagtcttagaaccttacagcaggagcca 624

                                                                       
Query: 425 tcttgccactggacccaagtctacatcctattgtgatgccaggcacagagctacagttaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcttgccactggacccaagtctacatcctattgtgatgccaggcacagagctacagttaa 684

                                                                       
Query: 485 atgcttaagtttttgagagctattagataatgactttgacataatgaaataaccaaatat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgcttaagtttttgagagctattagataatgactttgacataatgaaataaccaaatat 744

                                                                       
Query: 545 caaaatgaatgaaataaatgtttagaaaacaatgaaatttagtgagtattgatattaact 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caaaatgaatgaaataaatgtttagaaaacaatgaaatttagtgagtattgatattaact 804

                                                                       
Query: 605 gacttctgggagcattaacaaatttaccaagaattatgtaactcatataaaaagatatta 664
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 805 gacttctgggagcattaacaaatttaccaagaattatgtaagtcatataaaaagatatta 864

                                              
Query: 665 agcatatganataatcttaagagtttctgcagaat 699
           || |||||| |||||||||||||||||||||||||
Sbjct: 865 agtatatgaaataatcttaagagtttctgcagaat 899


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space:   752100
Effective search space used:   752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no231_e16.g1 MSMg01no231_e16.g1 CHROMAT_FILE:
MSMg01no231_e16.g1 PHD_FILE: MSMg01no231_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:33 2005
         (289 letters)



>mm_chr10_87734045_87734733
          Length = 689

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaacatgggaactaaaatgtacattttgccaatgaactgggagaataaggcacctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 agaaacatgggaactaaaatgtacattttgccaatgaactgggagaataaggcacctttg 429

                                                                       
Query: 61  ctttggaagactgaccctctccaagtaccttctcggcactgctgaggaggacagcctctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ctttggaagactgaccctctccaagtaccttctcggcactgctgaggaggacagcctctg 369

                                                                       
Query: 121 ctgttgggatctgctcagttgttcaatatagtggagtgcaaaattaaatgttagcgttct 180
           |||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||
Sbjct: 368 ctgttgggatctgctcagttgttcaatacagtggagtacaaaattaaatgttagagttct 309

                                                                       
Query: 181 ggaacccgacccttactcagaccatgttgctgcagtggcagagtcttcagtgggctcaga 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggaacccaacccttactcagaccatgttgctgcagtggcagagtcttcagtgggctcaga 249

                                                           
Query: 241 tctgtttgtatttaaacctagcaagccaaggctattgtatattcaaaa 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tctgtttgtatttaaacctagcaagccaaggctattgtatattcaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)