BAC Information

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BAC

Clone NameMSMg01-231K05
Chromosome10 (Build37)
Map Location 31,525,566 - 31,525,855
singlet/doubletsinglet
Overlap geneTcba1
Upstream geneHey2, LOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231K05.T7 (MSMg01no231_k05.b1)MSMg01-231K05.TJ (MSMg01no231_k05.g1)
ACCAG398391AG398392
length719720
length of high quality
(start - end)
321 (46 - 366)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no231_k05.b1 PHD_FILE: MSMg01no231_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:58 2005CHROMAT_FILE: MSMg01no231_k05.g1 PHD_FILE: MSMg01no231_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTTAGAGCATCCTCCTGGGACAGTCTGCAGAGGTGAGTGGCACC
CAAGGTCCCCTGAGCCCCATTGCCTAGCTCTAGTCTTGCTGCTTGGTCTG
GAGGAGACCTTGGGACCCGAAGAGCATCTTGTCTCACCATGAAAAGCTTT
AGGGACTCCAAAACTTAGAACCCTGCCTGACTACCTATCCCAGTTGGATC
TGCCTGCCACCCCAGCTGGGTTCAACTGGGACACAGCGTGCATCATAAGG
TCCATCCAAGACTTAGACTGCAGAGTGGGGTCTGCCTGAGGCACAACCAA
TAGAGTAGGTACTCTGACTTCCACTCTCCGCACCACAGCTTTCCCACTTT
CCTGAGAAGTTATGCTCCCACCCACGACCATCCAGTCAACACTAGGGAAA
AGCATATGCCTAAAGGACAGCATAAGAATACAATCAACAAGACCCACACC
AACATGGTACCACCAGAGCCCAGCTATACTATTATAACAAACCCTGGATA
TCTTAATGAAGCAGAACGACAAGAAGAGGATATTAAGGTAATATAGGCCT
TTACAGAGGACATGGATAAATGCCTTAAGAAAATACAGTCTAACAGGTAG
AGGCACTGAAAGCGGAAGCAAACTAATGTAATGAAATGCAGGAAAATACT
ACCAAACAGGAGGAAGATN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATTTTTT
TTCTAATTTTTTTATTAGGTATTTTCCTCATAAAAATTTTTTGATGAAAT
GGATTACAAAATAGGTGACTTGAAACTCTACTCATCTTTGAATGGTCTTC
TCAGATGTCTTTTTTATGTGGAATATGGGAAACCCCTTATATTTCCTATG
TCTCAAGCTGAGCCTTATGCCAAATCCTGTGATATGTCATTAATGATTGA
GAAAGAGAAGCAAGAATTGCCATTTGCTGTTTGAGAACAGTATTGTTGCA
GAATATCAGTATTGTCTTTTCCCCTCCACCCCCCAACAATAATCCTCAAG
GAAAGAAGGCAACTGGTTACACCCCTACTTTCCCAGGACTGACAATGTTT
CTGCTTTGAAGTTTTATAGAAACTTCAGTTTCAATTTTAAGTATCTGAAT
CAGACTATTTAAGACATGAGTTGTCCAAAGAGGCTTCATGTTCCAATGGT
GGGGACCAAACTTGGGACGTGTACAATAGTCCTCCCACTGAGTCTCACCA
TCGACTTTCCTGTTGTCATTATATTGGTTGGTTTGGTGCTGGGTTTGCGC
ATTATCCCCAATACATCCTTATTATGCATTATAGACTCTTCTTCAACTTA
CAGTTTTCTTGTTTCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_k05.g1 MSMg01no231_k05.g1 CHROMAT_FILE:
MSMg01no231_k05.g1 PHD_FILE: MSMg01no231_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:59 2005
         (289 letters)



>mm_chr10_31525366_31526055
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%), Gaps = 1/290 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgttcagctctgagccccattttttttctaatttttttattaggtattttcctcataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tttgttcagctctgagccccattttttttctaatttttttattaggtattttcctcataa 431

                                                                       
Query: 61  aaa-ttttttgatgaaatggattacaaaataggtgacttgaaactctactcatctttgaa 119
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aaatttttttgatgaaatggattacaaaataggtgacttgaaactctactcatctttgaa 371

                                                                       
Query: 120 tggtcttctcagatgtcttttttatgtggaatatgggaaaccccttatatttcctatgtc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tggtcttctcagatgtcttttttatgtggaatatgggaaaccccttatatttcctatgtc 311

                                                                       
Query: 180 tcaagctgagccttatgccaaatcctgtgatatgtcattaatgattgagaaagagaagca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tcaagctgagccttatgccaaatcctgtgatatgtcattaatgattgagaaagagaagca 251

                                                             
Query: 240 agaattgccatttgctgtttgagaacagtattgttgcagaatatcagtat 289
           |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agaattaccatttgctgtttgagaacagtattgttgcagaatatcagtat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space:   190680
Effective search space used:   190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)