BAC Information

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BAC

Clone NameMSMg01-231O10
Chromosome10 (Build37)
Map Location 49,222,438 - 49,296,038
singlet/doubletdoublet
Overlap geneGrik2
Upstream geneLOC546562, LOC100041689
Downstream geneLOC629652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231O10.T7 (MSMg01no231_o10.b1)MSMg01-231O10.TJ (MSMg01no231_o10.g1)
ACCAG398579AG398580
length748748
length of high quality
(start - end)		321 (45 - 365)667 (77 - 743)
definitionCHROMAT_FILE: MSMg01no231_o10.b1 PHD_FILE: MSMg01no231_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:17 2005CHROMAT_FILE: MSMg01no231_o10.g1 PHD_FILE: MSMg01no231_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,295,722 - 49,296,038)(49,222,438 - 49,223,104)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGATTTTTGAGAATATAAATTAGTTTTACATTTCAGATTCATGCCA
TGGTGATAAAGGGTTTACAAGACTGGAGGGAAAAGGTTCGACTTGACTGT
AAAAAGTTCTGTTTGTCACAACAAATGCAAAGTAAGTCATTAAATTCAAG
GCAAGTGAATATGATTAGTAGTATCACTCAAGACATTTCCATTAAGGAAG
AAGAAATTCTGATGCTAATGAAAAAATTCATATTGAAACATAAGAAGTGA
GGAAAATATAGATAAAATATTAAAATATTAATAGACTTCTTAATGGTGAC
TTCAAAGGTTCAGCGTATAAATATACACCCCACACTTTCCTGACAACAAA
CAGAATACTATTAACTGATATCCTAGCACAATCCTTAGGCAATAAATTCA
CCTGATTTATAAGACATTTTCTCAATTAAGCATCTGTTAAAGCCTATTAG
GAATCTAACCTAGAGGTAGGAAAACTCAGATTAGCGACTTTCTTCGCAAC
ATGTAAAAAGGGGTGAAGCTATCATTTCTATCTTGTTTATTGAGCTATTA
TTGCTTAGGGCATGAATAAAGCAAATGAAGAGAGATACAATGGATATTTT
GAATCTTACAACATCTCTACAAATGTCCAAAATAGTCATGATAGTAAAGA
TGAACTTTAAAATAGATACCAACTGAGACATTTATTATATATAATATA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAATATCCCTTAGGCAAATTCAC
CTAAAACTCCTCATTTCATTTTGTCTCAAATATTCTTTTGATTTATTAAT
GTGGATTTAAAGAGTGCTGGTCTGAGCAGTTTAAAGCATCAAAGTAGAAC
CTTCCACATTTCTTAAAACTTTATATCACAAAAATGCATAGACTATATTT
TTAAAAATTAGGCTTTTCAAATTCCATTTATCATTCATGCTTACTTACTC
ACTTATTACCCAAACATTAAAGTAAGCAACTATGTATGCTTTTCTGTAGA
ACCTATACGTTTACATTTATATTCATATGCAACATTGTACAAATACAGTG
TCAAGACTCTGAGAATAATGAAGCTTAATCTGAGCAGAAACAACACACTC
ATGAGCAGGAACAGCATTTGGATTGTAATAAGTGAAAGCCTTTTATGGGC
AAGTCACTATGTGCAATAAACCACCTGTGAGCTGTATAAATATGACATAT
TCAATATGTAGATTTACAGTATGATCCAATCATTACATTTCCATTGAATA
GATGAACTGACTGAGGCTTTGCTATACTAAAAAGTTAATGGAAGTTTAGA
GAGAATGTAATGGCAGACTTTGGTTTTTATGGCCAGATTCTGATCACAGA
GCTCTTTCACTAAGATAGAAGTACAATATATTTATAGTCATTCAACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_o10.b1 MSMg01no231_o10.b1 CHROMAT_FILE:
MSMg01no231_o10.b1 PHD_FILE: MSMg01no231_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:17 2005
         (321 letters)



>mm_chr10_49295581_49296301
          Length = 721

 Score =  582 bits (301), Expect = e-171
 Identities = 313/317 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagatttttgagaatataaattagttttacatttcagattcatgccatggtgata 64
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 458 gaattcagatttttgagaatataaattagttttacatttcagatccatgccatggtgata 399

                                                                       
Query: 65  aagggtttacaagactggagggaaaaggttcgacttgactgtaaaaagttctgtttgtca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aagggtttacaagactggagggaaaaggttcgacttgactgtaaaaagttctgtttgtca 339

                                                                       
Query: 125 caacaaatgcaaagtaagtcattaaattcaaggcaagtgaatatgattagtagtatcact 184
           ||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 338 caacaaatgcaaactaagtcattaaattcaaggcaagtgattatgattagtaatatcact 279

                                                                       
Query: 185 caagacatttccattaaggaagaagaaattctgatgctaatgaaaaaattcatattgaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 caagacatttccattaaggaagaagaaattctgatgctaatgaaaaaattcatattgaaa 219

                                                                       
Query: 245 cataagaagtgaggaaaatatagataaaatattaaaatattaatagacttcttaatggtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 cataagaagtgaggaaaatatagataaaatattaaaatattaatagacttcttaatggtg 159

                            
Query: 305 acttcaaaggttcagcg 321
           |||||||||||||||||
Sbjct: 158 acttcaaaggttcagcg 142


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no231_o10.g1 MSMg01no231_o10.g1 CHROMAT_FILE:
MSMg01no231_o10.g1 PHD_FILE: MSMg01no231_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:17 2005
         (667 letters)



>mm_chr10_49222238_49223304
          Length = 1067

 Score = 1220 bits (631), Expect = 0.0
 Identities = 658/667 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaatatcccttaggcaaattcacctaaaactcctcatttcattttgtctcaaatattct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ctaatatcccttaggcaaattcacctaaaactcctcatttcattttgtctgaaatattct 260

                                                                       
Query: 61  tttgatttattaatgtggatttaaagagtgctggtctgagcagtttaaagcatcaaagta 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 tttgatttattaatgtggatttaaagagtactggtctgagcagtttaaagcatcaaagta 320

                                                                       
Query: 121 gaaccttccacatttcttaaaactttatatcacaaaaatgcatagactatatttttaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaccttccacatttcttaaaactttatatcacaaaaatgcatagactatatttttaaaa 380

                                                                       
Query: 181 attaggcttttcaaattccatttatcattcatgcttacttactcacttattacccaaaca 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attaggcttctcaaattccatttatcattcatgcttacttactcacttattacccaaaca 440

                                                                       
Query: 241 ttaaagtaagcaactatgtatgcttttctgtagaacctatacgtttacatttatattcat 300
           ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaagtaaacaactatgtatgctcttctgtagaacctatacgtttacatttatattcat 500

                                                                       
Query: 301 atgcaacattgtacaaatacagtgtcaagactctgagaataatgaagcttaatctgagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 501 atgcaacattgtacaaatacagtgtcaagactctgagaataatgaagtttaatttgagca 560

                                                                       
Query: 361 gaaacaacacactcatgagcaggaacagcatttggattgtaataagtgaaagccttttat 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 gaaacaacacactcatgagcaggaacagcatttggattgtaataagtgaatgccttttat 620

                                                                       
Query: 421 gggcaagtcactatgtgcaataaaccacctgtgagctgtataaatatgacatattcaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggcaagtcactatgtgcaataaaccacctgtgagctgtataaatatgacatattcaata 680

                                                                       
Query: 481 tgtagatttacagtatgatccaatcattacatttccattgaatagatgaactgactgagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtagatttacagtatgatccaatcattacatttccattgaatagatgaactgactgagg 740

                                                                       
Query: 541 ctttgctatactaaaaagttaatggaagtttagagagaatgtaatggcagactttggttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctttgctatactaaaaagttaatggaagtttagagagaatgtaatggcagactttggttt 800

                                                                       
Query: 601 ttatggccagattctgatcacagagctctttcactaagatagaagtacaatatatttata 660
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 801 ttatggccagattctgatcacagagctctttcactaagatagaagtacaagatatttata 860

                  
Query: 661 gtcattc 667
           |||||||
Sbjct: 861 gtcattc 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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