MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-231P02
Chromosome	10 (Build37)
Map Location	107,247,717 - 107,248,007
singlet/doublet	singlet
Overlap gene	EG628870
Upstream gene	Ppfia2, 8430416H19Rik, Lin7a, Myf5, Myf6, Ptprq
Downstream gene	Ppp1r12a, Pawr, EG667814, Syt1, EG368203
Link	Open Mouse BAC browser

Click to get alignment info.

name	Ppfia2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:327814 MGI:2443834
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	8430416H19Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:380660 MGI:2685720
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lin7a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108030 MGI:2135609
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Myf5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17877 MGI:97252
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Myf6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17878 MGI:97253
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ptprq (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237523 MGI:1096349
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG628870 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:628870 MGI:3647600
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins

name	Ppp1r12a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17931 MGI:1309528
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pawr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:114774 MGI:2149961
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG667814 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667814 MGI:3643934
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Syt1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20979 MGI:99667
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG368203 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:368203 MGI:3647286
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppfia2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40789297 GeneID:327814 MGI:2443834
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 transcript_id : NM_177373.3

name	8430416H19Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803141 GeneID:380660 MGI:2685720
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 8430416H19 gene transcript_id : NM_198636.2

name	Lin7a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:86991441 GeneID:108030 MGI:2135609
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lin-7 homolog A (C. elegans) transcript_id : NM_001039354.1

name	Lin7a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:86991443 GeneID:108030 MGI:2135609
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lin-7 homolog A (C. elegans) transcript_id : NM_001033223.2

name	Myf5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144227215 GeneID:17877 MGI:97252
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myogenic factor 5 transcript_id : NM_008656.4

name	Myf6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130704 GeneID:17878 MGI:97253
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myogenic factor 6 transcript_id : NM_008657.2

name	Ptprq (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487426 GeneID:237523 MGI:1096349
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein tyrosine phosphatase, receptor type, Q transcript_id : NM_001081432.1

name	EG628870 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149261036 GeneID:628870 MGI:3647600
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins product : predicted gene, EG628870 transcript_id : XM_893664.3

name	Ppp1r12a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803586 GeneID:17931 MGI:1309528
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase 1, regulatory (inhibitor) subunit 12A transcript_id : NM_027892.2

name	Pawr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119392099 GeneID:114774 MGI:2149961
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PRKC, apoptosis, WT1, regulator transcript_id : NM_054056.2

name	EG667814 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388649 GeneID:667814 MGI:3643934
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : predicted gene, EG667814 transcript_id : XM_992653.1

name	Syt1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31543795 GeneID:20979 MGI:99667
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : synaptotagmin I transcript_id : NM_009306.2

name	EG368203 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:45361706 GeneID:368203 MGI:3647286
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG368203 transcript_id : NM_203660.1

name	Ppfia2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40789298 GeneID:327814 MGI:2443834
definition	GO_component : GO:0019717 - synaptosome [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : liprin-alpha 2 product : PTPRF interacting protein alpha 2 protein_id : NP_796347.2

name	8430416H19Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38348514 CCDS:CCDS24159.1 GeneID:380660 MGI:2685720
definition	GO_function : GO:0003824 - catalytic activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC380660 protein_id : NP_941038.1

name	Lin7a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:86991442 CCDS:CCDS24160.1 GeneID:108030 MGI:2135609
definition	GO_component : GO:0016323 - basolateral plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0045202 - synapse [Evidence IEA]; GO:0019717 - synaptosome [Evidence IEA]; GO:0005923 - tight junction [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence TAS] GO_process : GO:0006887 - exocytosis [Evidence IEA]; GO:0007269 - neurotransmitter secretion [Evidence IGI]; GO:0015031 - protein transport [Evidence IEA]; GO:0048489 - synaptic vesicle transport [Evidence IMP]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; vertebrate homolog of C. elegans Lin-7 type 1; mammalian LIN-7 1; lin 7 homolog a product : lin 7 homolog a isoform 1 protein_id : NP_001034443.1

name	Lin7a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701728 GeneID:108030 MGI:2135609
definition	GO_component : GO:0016323 - basolateral plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0045202 - synapse [Evidence IEA]; GO:0019717 - synaptosome [Evidence IEA]; GO:0005923 - tight junction [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence TAS] GO_process : GO:0006887 - exocytosis [Evidence IEA]; GO:0007269 - neurotransmitter secretion [Evidence IGI]; GO:0015031 - protein transport [Evidence IEA]; GO:0048489 - synaptic vesicle transport [Evidence IMP]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; vertebrate homolog of C. elegans Lin-7 type 1; mammalian LIN-7 1; lin 7 homolog a product : lin 7 homolog a isoform 2 protein_id : NP_001028395.1

name	Myf5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678982 CCDS:CCDS24161.1 GeneID:17877 MGI:97252
definition	GO_component : GO:0005634 - nucleus [Evidence TAS] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003705 - RNA polymerase II transcription factor activity, enhancer binding [Evidence TAS]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0030198 - extracellular matrix organization and biogenesis [Evidence IMP]; GO:0007517 - muscle development [Evidence IGI]; GO:0001952 - regulation of cell-matrix adhesion [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007519 - striated muscle development [Evidence IGI] codon_start : 1 note : myogenic regulatory factor MYF-5 product : myogenic factor 5 protein_id : NP_032682.1

name	Myf6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678984 CCDS:CCDS24162.1 GeneID:17878 MGI:97253
definition	GO_component : GO:0005634 - nucleus [Evidence TAS] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003705 - RNA polymerase II transcription factor activity, enhancer binding [Evidence TAS]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007517 - muscle development [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007519 - striated muscle development [Evidence TAS] codon_start : 1 product : myogenic factor 6 protein_id : NP_032683.1

name	Ptprq (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487427 GeneID:237523 MGI:1096349
definition	GO_component : GO:0005886 - plasma membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA] GO_process : GO:0042472 - inner ear morphogenesis [Evidence IMP]; GO:0006470 - protein amino acid dephosphorylation [Evidence IEA]; GO:0007185 - transmembrane receptor protein tyrosine phosphatase signaling pathway [Evidence IEA] codon_start : 1 product : protein tyrosine phosphatase, receptor type, Q protein_id : NP_001074901.1

name	EG628870 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149261037 GeneID:628870 MGI:3647600
definition	codon_start : 1 product : hypothetical protein protein_id : XP_898757.3

name	Ppp1r12a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:95772123 GeneID:17931 MGI:1309528
definition	GO_function : GO:0004721 - phosphoprotein phosphatase activity [Evidence ISS] codon_start : 1 note : myosin phosphatase, target subunit 1 product : protein phosphatase 1, regulatory (inhibitor) subunit 12A protein_id : NP_082168.1

name	Pawr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:87196490 GeneID:114774 MGI:2149961
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0042094 - interleukin-2 biosynthesis [Evidence IMP]; GO:0030889 - negative regulation of B cell proliferation [Evidence IMP]; GO:0042130 - negative regulation of T cell proliferation [Evidence IMP]; GO:0050860 - negative regulation of T cell receptor signaling pathway [Evidence IMP]; GO:0042986 - positive regulation of amyloid precursor protein biosynthesis [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : prostate apoptosis response 4 product : PRKC, apoptosis, WT1, regulator protein_id : NP_473397.1

name	EG667814 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94388650 GeneID:667814 MGI:3643934
definition	codon_start : 1 product : hypothetical protein protein_id : XP_997747.1

name	Syt1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678197 CCDS:CCDS24163.1 GeneID:20979 MGI:99667
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0043005 - neuron projection [Evidence IDA]; GO:0005886 - plasma membrane [Evidence TAS]; GO:0042734 - presynaptic membrane [Evidence IDA]; GO:0030141 - secretory granule [Evidence IDA]; GO:0045202 - synapse [Evidence IEA]; GO:0008021 - synaptic vesicle [Evidence IEA]; GO:0030672 - synaptic vesicle membrane [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IDA]; GO:0005544 - calcium-dependent phospholipid binding [Evidence TAS]; GO:0050750 - low-density lipoprotein receptor binding [Evidence ISS]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0007269 - neurotransmitter secretion [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : synaptotagmin 1 product : synaptotagmin I protein_id : NP_033332.1

name	EG368203 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45361707 GeneID:368203 MGI:3647286
definition	codon_start : 1 product : C6.1A-like protein_id : NP_988991.1

clone name	MSMg01-183P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-526P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-308F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500E21
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-231P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-170B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-084I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515P03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176L03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-344C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-191I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486P03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-070P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232I07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-319B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-006N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-305E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-338A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-223G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285A02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288J08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201K11
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-231P02.T7 (MSMg01no231_p02.b1)	MSMg01-231P02.TJ (MSMg01no231_p02.g1)
ACC	AG398607	AG398608
length	724	728
length of high quality (start - end)	239 (125 - 363)	291 (78 - 368)
definition	CHROMAT_FILE: MSMg01no231_p02.b1 PHD_FILE: MSMg01no231_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:20 2005	CHROMAT_FILE: MSMg01no231_p02.g1 PHD_FILE: MSMg01no231_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:20 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA ATTCCAGAGGAGACAAAAACCAGTCAGGCCTCATAAGTGACTTTATCCTT GTTTGACTTGCAAACATATCTGACACTTAACCTGAGCTATTTCTTGTAAA TGCCAATATGAACATAAAATGAAACTAAAGTTCAACCCATAAAAGCCACA AATTAACTTTTAAATGTATAACTAGAGCCTTCTATCAAGGCAGACCAAGT AAGGTCATTTTATAGCCAGAACCAAATGAATTTTTTTTTCTGCTCTACTT GTATTTGTGCATCTTTTAAAAGATGTCCACTTGCAATTCTTGCTCCAGTA CTGTGACATCTATATATCATGACCCCGCCCAAGTAAATGCTTTATAATTC TACTGGGTCTCGAGTTACCTTTAAGCAACAATATGTGTTTTGAATATGAC AATTTGTGAATTTATACACATACTTACAAGTTGGAACTGTCATAAATAAG ATTTAAAATATCCATGTAAGCCGGGCGTGGTGGCACATGCCTTTAATCCC ACCACTCAGGAGGCGGAGGCAGGAAGATTTCTGAGTTTGAGGCCAGCCTG GTCTACAAAGTGAGTTCCAGAACAGCCAGNGCTATACAGAGAAACCCTGT CTCGAAAAACAAAAATAAATAAATAAATATACATGTAAAAAGCATTGGTT TGTGTGTGTGTGCAAGCAGGTTTC	CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXGTAACACAATGGAAAACAGACCA CCACAACTGCGGCCAACTTAACAGAAGCAATGTTTGCCAAGCAGCAAGTG GTTGTGACTCAAGTGCCCTGACTCCAGTGATCTGCAGACAACAGGCCAGA AAGCCCAGAGGAGGACCTGAAGTCAAGCTGTGGGAGAGTACAGGTTTAAA CGAGGAAGTCTCCATGTCACCTCCTTATGCACAGAAGTGTTACCCACGCC TTGCCTGGCAGCACAGACTACAGGCTCAGCGCCTTGGAAGTCCTAGGTGT TTAGAAGTCTCAGTTGATTTCACTTTTGCTAACCGCCTTTGGCAAAGTTA TTTAATGTCTTCATGTCTCAACTTCCTCTGAAATAGAATGTTGGCGGGAG CTACTCTTATTATTACTGTTGCTATTATTAGTCAATCAATTACATTTTTA ATTATGGAGCCCAGAAGATTGATTGATATACTCAATCCCATGTCTCTGTC TCTGCCCCTCACCCCAGCACCCTTCCCTGTCTCTGGCTGATTTTGTGTGT CTTTCTCTCCCTGTTTCTCTCTGTCTTCTGCTACCTAGCTTTCTCTTCCC TTTTTCTACTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG GTGGCTTCCTTACTTTAATATTTTTCCT
quality values	Open. Hide. 8 8 8 8 8 10 15 36 35 34 29 29 28 22 22 32 23 23 22 20 20 28 37 48 31 29 36 36 36 36 39 43 37 32 30 30 30 40 43 33 29 19 21 21 42 34 68 68 47 47 47 47 68 50 68 68 68 51 68 57 50 50 50 48 48 57 57 57 54 50 50 50 50 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 59 57 57 57 57 53 59 50 50 50 47 37 37 34 21 13 8 8 8 13 11 9 9 10 15 27 37 47 59 59 50 50 53 53 57 53 57 57 53 53 53 57 57 57 57 57 53 53 53 50 50 68 68 68 68 47 47 47 51 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 54 54 54 54 54 68 68 68 68 68 68 68 57 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 50 50 46 46 32 25 19 11 11 11 12 12 12 15 18 30 28 19 12 10 10 9 9 8 8 8 11 8 10 11 11 12 24 30 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 68 68 59 59 54 47 59 46 48 48 34 34 15 14 12 23 16 20 20 20 20 18 27 18 28 32 42 59 59 68 68 68 68 68 68 68 57 57 57 57 68 68 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 47 47 47 50 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 35 32 15 29 29 44 59 57 57 57 57 50 50 50 50 50 53 50 57 50 50 59 59 59 47 47 59 41 41 41 37 37 43 41 41 41 46 47 59 59 48 59 48 47 47 47 47 39 47 48 53 48 50 50 50 47 41 39 39 35 31 31 36 37 41 43 34 34 28 22 22 30 36 59 43 37 20 23 11 21 21 34 36 41 37 19 16 12 17 19 29 32 28 28 31 20 18 18 17 17 21 29 31 43 28 34 34 36 36 39 47 46 41 41 41 32 29 29 37 37 37 34 29 24 28 28 34 25 15 19 3 0 3 23 16 32 32 34 34 32 32 18 18 14 27 17 25 25 32 34 37 37 35 37 35 43 34 28 19 10 10 9 13 13 28 28 33 47 41 41 33 23 21 18 18 18 25 25 32 32 37 21 23 12 11 9 14 15 19 18 15 19 17 41 39 39 39 39 31 12 8 8 8 8 13 14 30 30 32 31 30 24 24 14 19 13 14 19 17 24 14 10 10 10 10 10	Open. Hide. 9 9 7 13 15 8 8 8 8 19 23 33 33 33 41 48 48 53 53 53 57 57 57 57 57 57 57 57 57 53 53 48 48 43 43 42 42 42 42 36 36 41 41 42 48 43 43 40 42 42 50 50 50 50 54 54 54 54 57 57 57 42 48 41 41 41 48 59 57 57 48 48 46 46 50 50 59 68 68 57 57 57 68 68 68 57 50 68 68 68 68 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 68 68 68 68 57 59 59 52 52 52 52 44 43 23 23 23 44 44 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 68 57 57 57 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 62 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 59 68 68 68 68 68 68 68 68 68 68 68 59 59 43 36 36 28 31 20 20 23 41 43 59 57 57 57 54 54 68 68 57 57 57 57 57 57 57 57 57 59 59 59 48 48 48 57 57 50 50 44 59 39 23 22 12 15 15 12 12 12 12 12 13 21 19 15 13 13 12 12 12 11 11 12 13 19 27 32 47 41 37 48 48 48 53 57 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 41 26 15 13 13 13 18 18 41 41 39 36 36 28 31 12 12 9 9 9 22 22 31 31 32 37 39 48 48 48 48 48 48 48 50 50 50 50 48 48 48 48 57 57 57 57 57 57 59 59 59 59 59 59 59 57 54 54 54 54 48 48 48 43 43 43 43 43 48 48 50 50 50 57 57 48 48 48 48 41 41 37 37 37 37 39 37 37 31 31 39 39 36 31 34 28 28 31 27 28 13 21 21 33 31 35 43 43 48 48 48 59 59 59 43 35 35 35 43 43 48 48 48 48 48 48 48 48 48 48 42 47 47 59 59 59 41 37 37 36 39 30 19 19 15 17 19 32 37 37 37 41 41 41 44 39 24 22 19 17 19 22 41 34 34 28 28 20 25 30 26 23 18 22 19 21 21 30 30 21 18 11 11 10 10 11 11 21 19 37 32 22 26 17 17 11 14 17 27 25 36 23 15 10 8 8 15 14 19 19 23 23 11 11 11 23 22 30 30 24 28 28 34 36 43 22 22 10 11 11 24 24 13 12 12 12 10 10 14 23 18 13 16 11 11 13 10 10 10 17 15 28 23 32 23 19 21 24 16 19 20 28 20 15 15 21 19 23 20 20 15 23 14 17 22 25 24 22 14 14 11 10 9 9 10 10 6 6 8 8 11 11 8 8 8 8 8 8 8 8 8 8 8 8 15 10 9 9 10 10 10

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no231_p02.g1 MSMg01no231_p02.g1 CHROMAT_FILE:
MSMg01no231_p02.g1 PHD_FILE: MSMg01no231_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:20 2005
         (291 letters)



>mm_chr10_107247517_107248207
          Length = 691

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaacacaatggaaaacagaccaccacaactgcggccaacttaacagaagcaatgtttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaacacaatggaaaacagaccaccacaactgcggccaacttaacagaagcaatgtttgc 260

                                                                       
Query: 61  caagcagcaagtggttgtgactcaagtgccctgactccagtgatctgcagacaacaggcc 120
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 261 caagcagcaagtggttgtgactcaagtgcccccactccagtgatctgcagacaacaggcc 320

                                                                       
Query: 121 agaaagcccagaggaggacctgaagtcaagctgtgggagagtacaggtttaaacgaggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 agaaagcccagaggaggacctgaagtcaagctgtgggagagtacaggtttaaaagaggaa 380

                                                                       
Query: 181 gtctccatgtcacctccttatgcacagaagtgttacccacgccttgcctggcagcacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctccatgtcacctccttatgcacagaagtgttacccacgccttgcctggcagcacaga 440

                                                              
Query: 241 ctacaggctcagcgccttggaagtcctaggtgtttagaagtctcagttgat 291
           | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgacaggctcagcgccttggaagtcctaggtgtttagaagtctcagttgat 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information