BAC Information

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BAC

Clone NameMSMg01-232A02
Chromosome10 (Build37)
Map Location 58,392,476 - 58,393,088
singlet/doubletsinglet
Overlap genenone
Upstream genePkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099
Downstream geneSh3md4, Sept10, Ankrd57, LOC664892, P4ha1, LOC100039174, Pla2g12b, Oit3, Ccdc109a, LOC100039225, Cbara1, EG664907, LOC664936, Dnajb12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232A02.T7 (MSMg01no232_a02.b1)MSMg01-232A02.TJ (MSMg01no232_a02.g1)
ACCAG398651AG398652
length732731
length of high quality
(start - end)
595 (45 - 639)613 (77 - 689)
definitionCHROMAT_FILE: MSMg01no232_a02.b1 PHD_FILE: MSMg01no232_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:24 2005CHROMAT_FILE: MSMg01no232_a02.g1 PHD_FILE: MSMg01no232_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTAGTCTGTACCCCATTTTTGATAGGGTTATTTGGTTGTCT
GGAGTCTAACTTATTGAGTTCTCTTGTATATATTGGATATTAGCCCCCTA
TCAGATTTATGATTGGTAGAGATCTTTTCTCAATCTGTTGGTTGTCTTTT
TGTCTTATTGATAATGTTCTTTGCCTTACAGAAGCTTTGCAATTTTATGA
GGTCCCATTTGTTGATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCTTCTGTGCCCATATCTTCAAGGCTCTTCCCCACTTT
TTCCTCTATAAGTTTCATTTATATGGACTTCCTTGGTCTACTCAGACTTG
AGCTTTGTACAAGGACATAAAAATGGATCAATTCTCATTCTTCTACATGC
TAACCTCCAGTTGAGCCAGCACCATTTGTTTAAAATGCTGCCTTTTTTCC
ACTGGATGGTTTTAGCTCCTTTGTCAAAGATCAAGTGACAATTACACAAG
GGAGTACTATGCAGTTATTAAAAACAATGAATTTATGAAATTCCTAGACA
AGTGGATGGATCTGGAGAATATCATCCTAAGTGAGGTAACCTAATCACAA
AAGAACACACACGATTTGCACTCACTGATAAGTGGATATTAGCCCAGAAA
CTTAGAGTACCAAGATACAATTAGCAAGCACA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGAATGATCATGAGAACCACCTAC
TGGACAGAAGTGTCCATCACAGTCCGCACAAGGCACACACAAGCTGGGGA
GTGGAGCCCAACCCTGCTCCCAGCTGCTGGTTTTGAACATGGAGCTTTTC
CCATTCCAAAGCTTGGACTGCCAACTCCACCTGGAAGACTCATGTTGGCG
AATATCCAGGAAGCCTCTGTGGACTCCTGCTTCCTACCTGTCCCCTGGCA
CTCCCTAGCTAGGGCTCATCTGACTGGGCCGAGCTGCCATGCTTCGGAGT
CTCTCCCAGTCAGCACTGTGCTATCTATGGAAGGAAAGGGAACCTTAGCC
CTGAGAGCATGAACTCGCGAACATGAAGAGCCCAGTCTTATCCATCTGAG
GATGAGACTTGACAAGGTAGGATGGTGAAGGAGAAACGGTGGCTTGTCTC
CTAACTGCTGGGGCTCGGGGAGCAAGACCACATGGAGGTGTATAATCTGG
TGACTTACAGCCATCCTAGAAGGAGGGTACTTGTGAGAGAACAATTTCTA
CTTGGGGGTGTCAGTCAGTTATTCTGAGTCATAGAGGTAGTAGTGGCAGA
GCTGGGATCTCTACTTGTCTCTGCTTATAAGCCTTGTACCATTTCCTTCA
CCCCTGTTGCAGCTCCCTTACAGTCAGGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_a02.g1 MSMg01no232_a02.g1 CHROMAT_FILE:
MSMg01no232_a02.g1 PHD_FILE: MSMg01no232_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:24 2005
         (613 letters)



>mm_chr10_58392276_58393288
          Length = 1013

 Score = 1100 bits (569), Expect = 0.0
 Identities = 602/613 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaatgatcatgagaaccacctactggacagaagtgtccatcacagtccgcacaaggcac 60
           |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tgaatgatcatgagaatcacctactggacagaagtgtccatcacagtccacacaaggcac 260

                                                                       
Query: 61  acacaagctggggagtggagcccaaccctgctcccagctgctggttttgaacatggagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacaagctggggagtggagcccaaccctgctcccagctgctggttttgaacatggagct 320

                                                                       
Query: 121 tttcccattccaaagcttggactgccaactccacctggaagactcatgttggcgaatatc 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcccattccaaagcttgcactgccaactccacctggaagactcatgttggcgaatatc 380

                                                                       
Query: 181 caggaagcctctgtggactcctgcttcctacctgtcccctggcactccctagctagggct 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagggagcctctgtggactcctgcttcctacctgtcccctggcactccctagctagggct 440

                                                                       
Query: 241 catctgactgggccgagctgccatgcttcggagtctctcccagtcagcactgtgctatct 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catctgactgggctgagctgccatgcttcggagtctctcccagtcagcactgtgctatct 500

                                                                       
Query: 301 atggaaggaaagggaaccttagccctgagagcatgaactcgcgaacatgaagagcccagt 360
           ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 501 atggaaggaaagggaaccttagcccagagagcatgaactcgtgaacatgaagagcccagt 560

                                                                       
Query: 361 cttatccatctgaggatgagacttgacaaggtaggatggtgaaggagaaacggtggcttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttatccatctgaggatgagacttgacaaggtaggatggtgaaggagaaacggtggcttg 620

                                                                       
Query: 421 tctcctaactgctggggctcggggagcaagaccacatggaggtgtataatctggtgactt 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 tctcctaactgctggggctcggggagcaagaccacacggaggtgtataatctggtgactt 680

                                                                       
Query: 481 acagccatcctagaaggagggtacttgtgagagaacaatttctacttgggggtgtcagtc 540
            |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 681 gcagccatcctagaaggagggtatttgtgagagaacaacttctacttgggggtgtcagtc 740

                                                                       
Query: 541 agttattctgagtcatagaggtagtagtggcagagctgggatctctacttgtctctgctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agttattctgagtcatagaggtagtagtggcagagctgggatctctacttgtctctgctt 800

                        
Query: 601 ataagccttgtac 613
           |||||||||||||
Sbjct: 801 ataagccttgtac 813


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)