BAC Information

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BAC

Clone NameMSMg01-232C22
Chromosome10 (Build37)
Map Location 78,215,748 - 78,216,048
singlet/doubletsinglet
Overlap geneCcdc105
Upstream geneLOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14
Downstream geneSlc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232C22.T7 (MSMg01no232_c22.b1)MSMg01-232C22.TJ (MSMg01no232_c22.g1)
ACCAG398770AG398771
length747749
length of high quality
(start - end)
316 (41 - 356)289 (69 - 357)
definitionCHROMAT_FILE: MSMg01no232_c22.b1 PHD_FILE: MSMg01no232_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:37 2005CHROMAT_FILE: MSMg01no232_c22.g1 PHD_FILE: MSMg01no232_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACATGCTGAGGCAAGGCAAGTCGAAGACACGTGATGTTTGGAGGGTTTAA
ATAGGACACGATGGAGTGACGGAGAGATAGAGCTTAGCTTGCTGGTACTG
CTAGCTGTGCAACACTTGTTGGTCTCTCATCTTTGTTGATATTTGCTTCC
CTGAGTGAGACACAGCAGAGAACTTCTCCCGGTGTTCTCCCTGGTACCTC
CTGATGACTTGAGCCAAGGCTGAGGTGAGGCCTGGCTGACTCTGCTAGGT
CATGCCACCACTGCTGATTTTTGTTTGCTAACCTGACTCTCCTGAACTGG
ATTGCTGGNGTACCCCTGANGCTTTACCAGTTGATCAAGTTGCTGCTGCA
TGCTAACATGCCCACTGAAAAAAAAATTTCCAGACNACGCTGATGGGAGT
TGCGCCAAAGAACCTTTCTAAACAGGTTCACTATCCCTGTATCCTATCTT
TCCCACTACCTCTGATAGGTGGTGGACTACAAGGAAGGTTAAAGCATTTA
AGAACCATCATTAAAAACAGGATTTGAAAAAAATTAAAGTTACAGGTGGG
GGAGAAAATTGTGGCTCTTTATAGAGACTGTAGCCAGTAGAAGTTGCCTG
ATAGCCCTATTGTCACCAGGCAGGACTGGCCATAGAGGATGCCTGATTGG
CCACAATTTCTCTAACAATAGGTGGAACAACAATATGAACTAACCAG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTAGGATTTTCCAAATGCAAGGCTGTGTTAT
CTACTAGTAGATATAGGTTGGTTGACACATTTCCAAAATCAAGAGAAACA
ATGAGAGAGGAACTCCATAAAAGCGGCTCCCTCAAGGAATACAGTCTGAA
TTTCCAGGCCTAGTTCTCCATTTTGCCTTTCCCATCCCCCGCCCCTGGAA
CGCAATCTCCATGGTTGTCCTGGTTGCCACGGTGAGGGGAGCTCTGGGAG
CCACCAGTAAAGAGTGGTGTGTGGTTAGGGCTGGGTGGACCCCTGTCCAT
TCTCCGATTAGATCGCGCCCCACCACCCAAAGAACCATGCCTGTGTTGCT
CCCTTCCACCGACCCGGCCCAGAACTCACGCGTTGGGGCTCCAGAATGGC
GCCAGGCGGCCAAGGCCACGTCTCGCAAGGCACACCTTCTGACCGATCGC
TGTGGGCAGGAGGCGGTGACCATGTGGCAGCCCAAGGACAGTGTACTGGA
CCCGAACGTGGCACACCACCTGGGCCGCGCCGCCTACATGGAACCCTGGC
GCTTTCGGGTAGAGATGCTCAAAGGGGGCGGCACCCTGAAAAAGCCACCG
CCCGGAGAAGGCGTCACCCTATGGAAAGGGAAGATGAAGCCCCCGGCCTG
TTACGCGCGCCTACCGCTGCCTATGCAACGCGACGCGCGTGCCCAGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_c22.g1 MSMg01no232_c22.g1 CHROMAT_FILE:
MSMg01no232_c22.g1 PHD_FILE: MSMg01no232_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:37 2005
         (289 letters)



>mm_chr10_78215616_78216304
          Length = 689

 Score =  532 bits (275), Expect = e-155
 Identities = 289/301 (96%), Gaps = 12/301 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttaggattttccaaatgcaaggctgtgttatctactagtagatataggttggttgacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cttaggattttccaaatgcaaggctgtgttatctactagtagatataggttggttgacac 374

                                                                       
Query: 61  atttccaaaatcaagagaaacaatgagagaggaactccataaaagcggctccctcaagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 atttccaaaatcaagagaaacaatgagagaggaactccataaaagcggctccctcaagga 314

                                                                       
Query: 121 atacagtctgaatttccaggcctagttctccattttgcctttcccatcccccgcccctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atacagtctgaatttccaggcctagttctccattttgcctttcccatcccccgcccctgg 254

                                                                       
Query: 181 aacgcaatctccatggttgtcctggttgccacggtgaggggagctctggg---------- 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||          
Sbjct: 253 aacgcaatctccatggttgtcctggttgccacggtgaggggagctctgggagcacgcatt 194

                                                                       
Query: 231 --agccaccagtaaagagtggtgtgtggttagggctgggtggacccctgtccattctccg 288
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ctagccaccagtaaagagtggtgtgtggttagggctgggtggacccctgtccattctccg 134

            
Query: 289 a 289
           |
Sbjct: 133 a 133


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)