BAC Information

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BAC

Clone NameMSMg01-232I17
Chromosome10 (Build37)
Map Location 128,730,882 - 128,909,776
singlet/doubletdoublet
Overlap geneLOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788
Upstream geneIl23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1
Downstream geneOlfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4, 5830405N20Rik, EG625068, LOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232I17.T7 (MSMg01no232_i17.b1)MSMg01-232I17.TJ (MSMg01no232_i17.g1)
ACCAG399016AG399017
length752755
length of high quality
(start - end)
316 (46 - 361)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no232_i17.b1 PHD_FILE: MSMg01no232_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:03 2005CHROMAT_FILE: MSMg01no232_i17.g1 PHD_FILE: MSMg01no232_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,909,467 - 128,909,776)(128,730,882 - 128,731,164)
sequence
CTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTAATTTCTGTGTGATTCATATCCTCTCTCTTCTCCCCCTCCTG
ATGCTACTTCCTCTTCTATTTCCTCTTTTAAAGGTATTTAGGGTAAAAAA
TATCTGTCAAAGGAATTGAAAAATATGGCTTAGATTAATGTCATTCTAAC
AAATACAGTTCTAAAATATCTTCTCTACTTCATGATAATTAGATATGAAC
ATTATTATCACGTAGTTTTAGTGTGTGTTTATGAGTGCAGCTTATTTAAT
GGCCTCTTATGTATAACATAAGGTGTAGAGAAATTTTTGTATTGTAAGTC
ATATCATTATTTTATGGCACTACCCCGCCAGCAATTTTTACTTCATGTCT
AATTAGGACAAACCCCCGCTAACATTTGTTTAAGCAATATAAAACATGAA
TTTTCCTTTTAAAGTTAATGTATACATTAGTGGACTTCCTCCTAAAAACA
CAAATGTTTCCTTAGGTAATAACAGCTCCTATTATTTTATATATAAGAAT
TTTATATATAAGAACTCAGTCAACAATTCTTCTTAGCAAATAAAGTATTG
AAAAGTTTTATCTACATTTAAGTAATTAAACTTATTTTAATAGCAACATT
GTGGAATAAATGCTAAGAACAAGAGAAATTTATATATATACATATATGAT
TAAGATAGGGTAGCGTTTGTATTTACTCTTTTTCCACCTTACTTTCATTT
TG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGAGATTTTTAAATTTTCTAT
TTATCAGACTCCACAGAATTCACTGAATGAGTGATTAGACTTATTTTCAC
TAACTTTTCTTTTTACTATTTTCACACTTATATGTGTTTTTTTCTTTACA
GAAAAATATGAATAGAGTAGATTAATGAGCCCCAATAATAATGAACAGGA
TTAATTTTCAACATTAAAAGTCATATATATAAAAGAAAATTAGGAGAAAG
CAAGATCATTAAGTCTGGTTTAATATTAAATATATAACATTTTGAAAATA
ATGTTATTATATTATAACAAGACCCCCCGACAACTTTTACAGAAATGTTA
GAAAAATAATAACTAACACCCCATGACAGTTTATTTAAGTTGTATACCAA
TAAATTGTGAACTCCCTTATGTACACTTCATTTAAAATGAGTGAATTCTC
ATTTTGACAGCGTATTCATCGTAGTAATAATTTATTAAGGGCTTTGTTCA
TTTCAGTCATCAAAGGCTTGTATACTTTATTTCATTTAATCATTCTAAAA
TATTTGTAAAGCTTTTATTCTTATTCTCAGCTGGAGCATTGAGGTTCAGA
TTTGCCAACTTTCATTAATTTATACAAATTTCAAATGTTAGATATCATTA
GATTACCTACAATTAACGAATATTTTTTCATAAGAGCACTAAAAGCCCAT
CATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_i17.b1 MSMg01no232_i17.b1 CHROMAT_FILE:
MSMg01no232_i17.b1 PHD_FILE: MSMg01no232_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:03 2005
         (316 letters)



>mm_chr10_128909263_128909978
          Length = 716

 Score =  576 bits (298), Expect = e-169
 Identities = 307/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtaatttctgtgtgattcatatcctctctcttctccccctcctgatgctactt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattctgtaatttctgtgtgattcatatcctctctcttctccccctcctgatgctactt 455

                                                                       
Query: 65  cctcttctatttcctcttttaaaggtatttagggtaaaaaatatctgtcaaaggaattga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cctcttctatttcctcttttaaaggtatttagggtaaaaaatatctgtcaaaggaattga 395

                                                                       
Query: 125 aaaatatggcttagattaatgtcattctaacaaatacagttctaaaatatcttctctact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aaaatatggcttagattaatgtcattctaacaaatacagttctaaaatatcttctctact 335

                                                                       
Query: 185 tcatgataattagatatgaacattattatcacgtagttttagtgtgtgtttatgagtgca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tcatgataattagatatgaacattattatcacgtagttttagtgtgtgtttatgagtgca 275

                                                                       
Query: 245 gcttatttaatggcctcttatgtataacataaggtgtagagaaatttttgtattgtaagt 304
           ||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 274 gcttatttagtggcctcttatgtataacaggaggtgtagagaaatttttgtattgtaagt 215

                     
Query: 305 catatcatta 314
           ||||||||||
Sbjct: 214 catatcatta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no232_i17.g1 MSMg01no232_i17.g1 CHROMAT_FILE:
MSMg01no232_i17.g1 PHD_FILE: MSMg01no232_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:03 2005
         (285 letters)



>mm_chr10_128730682_128731366
          Length = 685

 Score =  532 bits (275), Expect = e-155
 Identities = 281/283 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttgagatttttaaattttctatttatcagactccacagaattcactgaatgagtgatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttgagatttttaaattttctatttatcagactccacagaattcactgaatgagtgatt 260

                                                                       
Query: 61  agacttattttcactaacttttctttttactattttcacacttatatgtgtttttttctt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 agacttattttcactaacttttctttttactattttcacacttatatgtgttattttctt 320

                                                                       
Query: 121 tacagaaaaatatgaatagagtagattaatgagccccaataataatgaacaggattaatt 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccagaaaaatatgaatagagtagattaatgagccccaataataatgaacaggattaatt 380

                                                                       
Query: 181 ttcaacattaaaagtcatatatataaaagaaaattaggagaaagcaagatcattaagtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaacattaaaagtcatatatataaaagaaaattaggagaaagcaagatcattaagtct 440

                                                      
Query: 241 ggtttaatattaaatatataacattttgaaaataatgttatta 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtttaatattaaatatataacattttgaaaataatgttatta 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)