BAC Information

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BAC

Clone NameMSMg01-232J11
Chromosome10 (Build37)
Map Location 105,233,942 - 105,234,227
singlet/doubletsinglet
Overlap geneBC067068
Upstream geneLOC100042383, Tmtc2, EG627573
Downstream geneCcdc59, EG667758, EG639162, Ppfia2, Olfr1556-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232J11.T7 (MSMg01no232_j11.b1)MSMg01-232J11.TJ (MSMg01no232_j11.g1)
ACCAG399049AG399050
length730736
length of high quality
(start - end)
320 (47 - 366)286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no232_j11.b1 PHD_FILE: MSMg01no232_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:07 2005CHROMAT_FILE: MSMg01no232_j11.g1 PHD_FILE: MSMg01no232_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTTGCAAATTTGTCTGGAATAACAAAAAACCTAGGATAGCAAAAAGT
CTTCTCAAGGATAAAAGAACTTCTCCCGGAATCACCATGCCAGACCTAAA
GCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAG
ACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCA
CACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTG
GAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTAT
CGTGTAGAAGAATGCGAATCGATCCCCACCTATCTCCTTGTACTAAGGTC
AAATCTAAGTGGATCAAGGACCTCCACATAAAACCAGAGACACTGAAACT
TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAA
AATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGAC
AAATGGGACCTAATGAAACTCCAAAGCTTCTGCAAGGCATAAGACACCGT
CAATAAGACTATAAGACCACCAACAGATTGGCAAAGGATCTTTACCTATC
CTACATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCACGAAG
GTGCACTTCATACCATCTAATACCCCCATT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTATTTTTGGCAACTGTTGTTTAA
TAACAATTTGTGAAAAATATGATAAAGGTATGAACTAGGTATGCTATTCT
CTGATTACTTCAGGTAATTGTTTTCACATCTCCATTATTACTAGGAATTG
TTACTAAGTAACCAATTCTATGAACTAAGTATGCTAGTCTTCCTACGTTT
CAGATAGGGAAACCGGGCATAGCCACGTGAAGAGAGCATCCGTTTTACAT
GCAGCATCATAGAAAAGTTTACACATGGCTGTTTTATTTATGATATGAAG
TGCATCAACTACTGGTCTTACCCCCACCACTTAGTTCAGTACTTTATTAT
ATATACCTTCACAGTGCCCCCCCCACTTGTAAAAGTCTTTTCATAATCTA
TTTTTTAATAGAATAGGAAATTATTAAACTGTTTAATTTAGTCAGAAATG
TTATTTTGTTTGATTTAAATGGTGTCCCTAGATGTAGAACATTTTAGCCC
TTGGCATTATTTATTTGTCCATGTTGTCATGTGAGCTTACAGAAGGGCAA
GCTAAATGTTAAAGGTGAGTATTTGCCACCAGAAAGCTTAAACGATGCAA
TTAGTTTTGGAATGATGAATCTATAACACTTAAATTATAGACTGAAGATT
ACACTTACTATTCCTAGTATTTATATCTCTAAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_j11.g1 MSMg01no232_j11.g1 CHROMAT_FILE:
MSMg01no232_j11.g1 PHD_FILE: MSMg01no232_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:07 2005
         (286 letters)



>mm_chr10_105233891_105234576
          Length = 686

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attatttttggcaactgttgtttaataacaatttgtgaaaaatatgataaaggtatgaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 attatttttggcaactgttgtttaataacaatttgtgaaaaatatgataaaggtatgaac 278

                                                                       
Query: 61  taggtatgctattctctgattacttcaggtaattgttttcacatctccattattactagg 120
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 277 taggtatgctattctctgattacttcaggtaatcattttcacatctccattattactagg 218

                                                                       
Query: 121 aattgttactaagtaaccaattctatgaactaagtatgctagtcttcctacgtttcagat 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 aattgttactaggtaaccaattctatgaactaagtatgctagtcttcctacgtttcagat 158

                                                                       
Query: 181 agggaaaccgggcatagccacgtgaagagagcatccgttttacatgcagcatcatagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 agggaaaccgggcatagccacgtgaagagagcatccgttttacatgcagcatcatagaaa 98

                                                         
Query: 241 agtttacacatggctgttttatttatgatatgaagtgcatcaacta 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  agtttacacatggctgttttatttatgatatgaagtgcatcaacta 52


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)