BAC Information

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BAC

Clone NameMSMg01-232P01
Chromosome10 (Build37)
Map Location 4,801,566 - 4,801,805
singlet/doubletsinglet
Overlap geneSyne1
Upstream geneLOC237252, LOC100041224, Rgs17, Mtrf1l, Fbxo5, LOC666395, Vip, Myct1
Downstream geneEsr1, LOC100041310, Gm221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232P01.T7 (MSMg01no232_p01.b1)MSMg01-232P01.TJ (MSMg01no232_p01.g1)
ACCAG399293AG399294
length722785
length of high quality
(start - end)
335 (37 - 371)239 (180 - 418)
definitionCHROMAT_FILE: MSMg01no232_p01.b1 PHD_FILE: MSMg01no232_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:33 2005CHROMAT_FILE: MSMg01no232_p01.g1 PHD_FILE: MSMg01no232_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGATCCGCGGAATTCAA
GGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAA
CATCAAAGTAAATGGACCGAAGCTGGAAGCAATCCCACTAAAATCAGGGA
CTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAA
GTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAAT
TGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTAT
ATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAAC
AGCTTCGGTGAAGTAGCTGGACATAACATAAACTCAAACAAGTCAATGGC
CTTTCTCTATACAAAGAACAAACAGGCTGAGAAAGAAATTAGGGAAACAA
CACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGACTCTA
ACTAAGGAAGTGAAAGATTCGTATGATAAAAACTTCAAATCTCTGAAGAA
AGTAATTAACGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGA
TTGGTAGGACCAACATTGTATCAACGGCTATCTTGCCAAAAGCAACCTAC
AGATTCTATGCTTTCCTCCTCACACTTCCTACTCAATTCTTCAACGAACT
GTTAGGAGCTATTCGCCTATTT
CTCTGTTTTTTTTCTTTCTCTTCTTACTTTTTCTCCCCTACCCNNNCCTT
CTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACTGGCCATGGACTGGTGTAA
GGTAGCTGGGTTGCAACAAATTTCCCCTTTAATTTTTTCCCCAGTGTCTG
GGAGGGGGTTGCAGATGCTAGTCAAGTGATCTAGTACTGAGCTATATTCC
AGCCCAATTTTTTCTTTAGTTCTACTGTGTGTTATGTATAAGTGATGTCA
ATATATACAGAATGGTAAGCAGATTCTAGACAGGTAAGTTGACATGGATG
GAGATCAGCAAGCTATATTCTTGCATTTGAGGAACTGGACTTTCTAACAC
TACAAGGAGTGAATTATTATAAGGTCCCTTGAAACTTTCTCAGACACTGG
TCTGCCAGCTAGAGTAGCTCCTGCATGTAAGCAGGAGAAATGCTGTCCTC
AGGAGATACAGGCTGCTATTAGGTAATGGTATAGGTCATGACAGATGCTT
ATATATAGTTATTTCTCCCCCGTCCCCATCTCTTGAAGCTATTCCCACTG
GATAGCATATTTTCCTACCCACAAGATGACAAGTGTTGAGTCCCACTTCC
AGTACCTGTTCCTTCCAGTATCTTCTGTCTCCCTAACACTTGAATATTGC
TCGGTAGGTCAAAGTTACCCAGGACTGAAATGAGTAACTAGATGAGGCCT
TCCTGCTTTAACAAAACCTTTTTGAATAGTTGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_p01.g1 MSMg01no232_p01.g1 CHROMAT_FILE:
MSMg01no232_p01.g1 PHD_FILE: MSMg01no232_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:33 2005
         (239 letters)



>mm_chr10_4801367_4802005
          Length = 639

 Score =  433 bits (224), Expect = e-126
 Identities = 236/240 (98%), Gaps = 1/240 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taattttttccccagtgtctgggagggggttgcagatgctagtcaagtgatctagtactg 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 200 taattttttccccagtgtctgggagggggttgcagatgcaagtcaagtgatctagtactg 259

                                                                       
Query: 61  agctatattccagcccaa-ttttttctttagttctactgtgtgttatgtataagtgatgt 119
           |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 260 agctatattccagcccaatttttttctttacttctactgtgtgttatgtataagtgatgt 319

                                                                       
Query: 120 caatatatacagaatggtaagcagattctagacaggtaagttgacatggatggagatcag 179
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 320 caatatatacagaatggtaagcagattctagataggtaagttgacatggatggagatcag 379

                                                                       
Query: 180 caagctatattcttgcatttgaggaactggactttctaacactacaaggagtgaattatt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caagctatattcttgcatttgaggaactggactttctaacactacaaggagtgaattatt 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)