BAC Information

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BAC

Clone NameMSMg01-233F24
Chromosome10 (Build37)
Map Location 71,559,498 - 71,559,780
singlet/doubletsinglet
Overlap genenone
Upstream geneBicc1, LOC622551, C730027H18Rik, Tfam, Ube2d1, LOC665472, Zcd1, Ipmk, LOC100039860, LOC216081, EG216082, LOC622812, EG327767, 1700049L16Rik
Downstream geneLOC100040505, Zwint, LOC432471
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233F24.T7 (MSMg01no233_f24.b1)MSMg01-233F24.TJ (MSMg01no233_f24.g1)
ACCAG399602AG399603
length697726
length of high quality
(start - end)
---283 (82 - 364)
definitionCHROMAT_FILE: MSMg01no233_f24.b1 PHD_FILE: MSMg01no233_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:04 2005CHROMAT_FILE: MSMg01no233_f24.g1 PHD_FILE: MSMg01no233_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCGGTAGATACAATAAGGTCAGACTGGAGCTCTGTAGTTGAGACATAGG
CATGATACTAATGACATAGTTTCCCACGTTCCCAGGCTAAGTGCATCATA
ACAGGATGTTTCCTTATTAACATCAACGTTTATTTGGTGTAAATATGATA
CATATTACATATTCTCAAGTCTTAATAAAGCTGATGGTGTTTGCATTGGA
AATTCGATAATTGCACAATACATGCTTTAATGTCTCTTCTGAAGATAGGA
CATCTATCAGATTCATTTATTGGAAAAAAAATCTTCTATTATATCTCAAA
TAGTAAAATTTTGTCCTGTCCCCCCCACCCCCCACCTATTTCCTGTCTGC
CTGTGTAATGTTAGCCTTTTAAATGAACAGATGATACATAGATCTAAGCT
GATCACTTTTTGAGCATCCCTTCACCTCTCTGTTTCTTCTGTGTTTTCTA
TTCATTCAGATATCCCCCTCCTTTTAGCTCTCTCTCTCTCCTTCTCTCTA
GCTCCATTAATACTGACTTTAATGCATTGTCAGTAGAATATATAAAACAT
ATGAAAGAGCCCCTAACGCCAGCTTAAGATATTTTTAATGATCACTCAGG
TTGAATTAATTAAAATGCCTAGTGGAAATAATTTACCCACCAGGAAG
NAACACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCATGTCAGAGATTCC
ATATAGACCTCTTGTTGCAGGGAAGCTAACCCATGTAAACACAACTTTAT
AGACAAGACTTCTCTTTAGCTCCTCATCAGGAAGAAGGTTAAACTGTTGT
GGTAGGAAATACATTTTGGAACAGCTCCAAGAAGGTGGCAGATGTGGCAA
AGTCTATGGAATAATCAATGGCCAGGGAGCAGAGAATAGGACCAGATCCA
AGGCCAGCATAACCCTCAAAAGGCTTGTCCATAGTGGTCATTCTCCACTA
CCCCAGGCCCACATTTCATANCACCCCCCACCCCCCCAAACAGCGGGAAC
CAAGGGCTCAAAAAATGAACATGCACGGAGAAGAAAAGATTCAAACTATG
ACATTCAGCAATTAATACGTCAGATATGTGCATGGTTATGGCCATGGGAT
CAAGCTCACTCAAAACTCTTCATGATGGAAGAATAGGCATGTCAGAGTGA
GCACTGTATACAACCTATACTTGCCTGAAGCTCCTCCTTTGAAGTTGACT
CCTGGTTTCTTTGCAAAATTGGGGCAGATGAATATATTCCATTTTGATGT
GATCTATGGATATTTTGGAAAAATCTTAAGCAATAATCTTGACTATCTCT
TCCCAAGTTGTAATAAACTTTAGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_f24.g1 MSMg01no233_f24.g1 CHROMAT_FILE:
MSMg01no233_f24.g1 PHD_FILE: MSMg01no233_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:04 2005
         (283 letters)



>mm_chr10_71559298_71559980
          Length = 683

 Score =  540 bits (279), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagcatgtcagagattccatatagacctcttgttgcagggaagctaacccatgtaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tcagcatgtcagagattccatatagacctcttgttgcagggaagctaacccatgtaaaca 424

                                                                       
Query: 61  caactttatagacaagacttctctttagctcctcatcaggaagaaggttaaactgttgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 caactttatagacaagacttctctttagctcctcatcaggaagaaggttaaactgttgtg 364

                                                                       
Query: 121 gtaggaaatacattttggaacagctccaagaaggtggcagatgtggcaaagtctatggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gtaggaaatacattttggaacagctccaagaaggtggcagatgtggcaaagtctatggaa 304

                                                                       
Query: 181 taatcaatggccagggagcagagaataggaccagatccaaggccagcataaccctcaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 taatcaatggccagggagcagagaataggaccagatccaaggccagcataaccctcaaaa 244

                                                      
Query: 241 ggcttgtccatagtggtcattctccactaccccaggcccacat 283
           || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gggttgtccatagtggtcattctccactaccccaggcccacat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)