BAC Information

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BAC

Clone NameMSMg01-234I07
Chromosome10 (Build37)
Map Location 34,727,327 - 34,727,532
singlet/doubletsinglet
Overlap genenone
Upstream geneRwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk, LOC667824
Downstream geneLOC100041585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234I07.T7 (MSMg01no234_i07.b1)MSMg01-234I07.TJ (MSMg01no234_i07.g1)
ACCAG400384AG400385
length719723
length of high quality
(start - end)
236 (123 - 358)208 (76 - 283)
definitionCHROMAT_FILE: MSMg01no234_i07.b1 PHD_FILE: MSMg01no234_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:31 2005CHROMAT_FILE: MSMg01no234_i07.g1 PHD_FILE: MSMg01no234_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAA
GACAGTCCCCGCCACCAGCCACCATAATTCCCAAACAAGACTATGGAGCA
TAAATAAATTTTATGCCTCGGTCCTGCTATTTTTTATTATATAATCAGCG
AGGAATCGTAGGCTCCCCCATCCTGAAGCAGGCTGATCCAGACTTTGACC
TTGCTGCCACTAAGAAGGTGATTACTTTGGGTGGAGCCTTCTGACCTAGA
TAGATCTTTTGTTCTGTCATCTGCCACTACTCTCTCCAAGACACTGCTAC
CTGCTTAGAGACCCCTGATATATTCCCAAGGAACATCCTATCCTGCATGT
CACCTGTTGGTTCCACACACCCACAATGGACTGGCGGGGGATGGGCCTTC
CCCCTTATAAGCACACTCTCTTAATAAACTGGCGGGCCTTGATCAGTATC
CTTTCTCTTGACTCCATTATCTTTCTCGCCATCTAAGTCTTTTTCAGCAC
CAGTTTGCCTCCCAGGCGCACCCGGTCCTTTGTAAGCCGCGGTCCGGCCA
TATAGCTTCCTAGATGTTTACCAATGCATCTTTATAGCTTTTATCATGCT
ACCTTGTCTTTCTTAAACTCCCTTCCCATGTATTGTACGCTATATATTAC
AGTTACTTTATTAACACATATATTATATATTACCCGCATAAATGAGTGTA
TATTTATGTACCTCACGGC
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACCCTGAGGGAACTATACTTGAAGA
TTTAATTAGGGAAATACTCTGGCACCGATTGGGGACTACCATTTAGGAAA
AGATTCAAATGTTTCTGGTGAAAAGAGATTTCCTCCTGGGATCTTATTTA
GCTTTGGACTACTGATTACATGTTTTAGTGTGGCTATAGTTATTGAACTA
CAGATGGTGGACTGGACAATTTCAAAAATACTTGGATAAAAATCATCTTT
ATGACTATGCAAATTGGTTGGCTCAGTTTCTCATAAGGATTTAGGCTCTG
ATGTTCACTTACTGTTTTTATCTCCCCACCCCCCCCCTCAGTTCTGTTAC
AGCCACAGTCATAATTCTTTACCATGTATTTGCTTTTGAATTTTACTCTT
GAGAGGAGAACATACTTGTAACACTTTTGTTTTACAATGTGTGGATGTGG
GTATAGAAGGTGCTAGAACATGCACAGGGGCGAGAGTCAGTAATGCAATC
ATACCCACTTTAGTTTAGTTTATCCTTCTTCCATATGCTACATCCCGTAT
ATTACCCCACTTCCTTTCACTCCTCCACGTCCCATTTCATCTCTTCCCTT
CCCCAAATCCACCCCTCCCTATCTTCTCTGTTTCCCTTTCAAAAAGTGCA
GGCCTCCCATGAATATCTTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_i07.g1 MSMg01no234_i07.g1 CHROMAT_FILE:
MSMg01no234_i07.g1 PHD_FILE: MSMg01no234_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:31 2005
         (208 letters)



>mm_chr10_34727127_34727734
          Length = 608

 Score =  368 bits (190), Expect = e-106
 Identities = 202/206 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   accctgagggaactatacttgaagatttaattagggaaatactctggcaccgattgggga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 accctgagggaactatacttgaagatttaattagggaaatactctggcagtgattgggga 260

                                                                       
Query: 61  ctaccatttaggaaaagattcaaatgtttctggtgaaaagagatttcctcctgggatctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaccatttaggaaaagattcaaatgtttctggtgaaaagagatttcctcctgggatctt 320

                                                                       
Query: 121 atttagctttggactactgattacatgttttagtgtggctatagttattgaactacagat 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttagctttggactactgattagatgttttagtgtggctatagttattgaactacagat 380

                                     
Query: 181 ggtggactggacaatttcaaaaatac 206
           || |||||||||||||||||||||||
Sbjct: 381 gggggactggacaatttcaaaaatac 406


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space:   119201
Effective search space used:   119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)