BAC Information

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BAC

Clone NameMSMg01-235G11
Chromosome10 (Build37)
Map Location 104,858,390 - 104,987,152
singlet/doubletdoublet
Overlap geneTmtc2, EG627573
Upstream geneLOC100042383
Downstream geneBC067068, Ccdc59, EG667758, EG639162, Ppfia2, Olfr1556-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235G11.T7 (MSMg01no235_g11.b1)MSMg01-235G11.TJ (MSMg01no235_g11.g1)
ACCAG400987AG400988
length725725
length of high quality
(start - end)
313 (46 - 358)294 (376 - 669)
definitionCHROMAT_FILE: MSMg01no235_g11.b1 PHD_FILE: MSMg01no235_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:43 2005CHROMAT_FILE: MSMg01no235_g11.g1 PHD_FILE: MSMg01no235_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,858,390 - 104,858,699)(104,986,859 - 104,987,152)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTCCCTCAGAACACTACAGCTGTTCATCTCCATCCCTGGCCACA
ACTGAATGAACAGAAAGCCACCCAATCAGAGTCAGGGTGGTGCCAATAAT
ACATTGAGAAAGGGCATCATATTTTGGGAGTGAGATGAGATCCTAGCGTT
GTTTAAAGGTAGGTTATGTCTGAGAATTAAGGCTAACTTATATTATCAGA
AATCAGGGCAAACGGGAAAGGGGACACTTCTTGGTATAGTTGGATCCAGC
TGTGCCTAAAGCCAACTGATGCAGCTTCCTCCCTCCAAGAGATGTTTGTC
TGACACATGTTATCAACAACCGCTGCTCCGCGCAGCACTCATTATACACT
TCTCGTATAACAGTACAGCCGCTCTTTTCGTGCCTTACATTTGCTAAGAC
TGAATCCACAGAGATTCTTCCTACAAACCACCTTTCTCTTCCACAGTCCC
CACCTTGAGTGCTTTCATGACTACATCGCTGAACTGGAGGCTGCACACGA
GGGTCCTTCTCTCATTGCCCCTACATCTTTTTCTGAAAACTGTTTAAGGA
CATTCTGAAGCTTTCCACCACATCAGAGCATCCCTTGAATCCACCTCTTG
TCCCTTTTCTGAAATCCTTATCTGGGCTTCCATTACTTCTCCCTTGTGCT
GCTCAGCACGCTGACTAGAGCTACC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGCTTTGAAAGCAGCTTTTTTTTT
GTGTCACAGATCCCTTTGGCCCTCTGGTGAAATCTGAGCTTCGAGTCTAG
GGAAAAAAATGTTTTAAATGCATGAAAAAATAAAAACCACACACACACAC
ACAGAAACAAATAGATTGAAATATATTGATCCAATGATTAGAACTCAAAT
ACACTCCGTAGTACTCAGTCTTCATTAAGCTATGTAATAGCATAATAAAG
TGCTAGGTCCATTAGCAGTCAGCAAATTGAAGTATTCATCAGCATAAATA
ATGTTTTTGTTAGTGTTGTACCACCTGCCATGTGATGGAAGAACCTCTGT
GTTTTTAGCTGTGGCACGAGGAGTCTTTGCTCTGGTGTGTTGCCTTCATT
TGCAGTTGAAGACAATGTTGACTAATTAAAAAGAAGATATCCCTTTCCTT
CCTATCCAAGTGTCTGAGATCCTGAATTCCTTGAATTGTGGTGGAAACGA
GGAGGATGAGGACCCCTGGGACCACTGAGGATGCATTTATTAAAAAGCAA
TGCAACATATTAAGCTATCAGGGACATACCAGTAGATTTCTTGGGATCTC
ACTGCTGTAGCTTTGAGAAGTTTGACTGAGGTCAGTAGACATCTGAGAAG
GGAACAGAAAGGTCAGCAGCTAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_g11.b1 MSMg01no235_g11.b1 CHROMAT_FILE:
MSMg01no235_g11.b1 PHD_FILE: MSMg01no235_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:43 2005
         (313 letters)



>mm_chr10_104858187_104858899
          Length = 713

 Score =  569 bits (294), Expect = e-166
 Identities = 306/310 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtccctcagaacactacagctgttcatctccatccctggccacaactgaatg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtccctcagaacactacagctgttcatctccatccctggccacaactgaatg 263

                                                                       
Query: 64  aacagaaagccacccaatcagagtcagggtggtgccaataatacattgagaaagggcatc 123
           ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aacggaaagccatccaatcagagtcagggtggtgccaataatacattgagaaagggcatc 323

                                                                       
Query: 124 atattttgggagtgagatgagatcctagcgttgtttaaaggtaggttatgtctgagaatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atattttgggagtgagatgagatcctagcgttgtttaaaggtaggttatgtctgagaatt 383

                                                                       
Query: 184 aaggctaacttatattatcagaaatcagggcaaacgggaaaggggacacttcttggtata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaggctaacttatattatcagaaatcagggcaaacgggaaaggggacacttcttggtata 443

                                                                       
Query: 244 gttggatccagctgtgcctaaagccaactgatgcagcttcctccctccaagagatgtttg 303
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 gttggatccagctgtgcctaaagccaacagatgcagcttcctccctccaagagatgtttg 503

                     
Query: 304 tctgacacat 313
           ||| ||||||
Sbjct: 504 tctaacacat 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no235_g11.g1 MSMg01no235_g11.g1 CHROMAT_FILE:
MSMg01no235_g11.g1 PHD_FILE: MSMg01no235_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:43 2005
         (294 letters)



>mm_chr10_104986505_104987198
          Length = 694

 Score =  538 bits (278), Expect = e-157
 Identities = 290/294 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgccatgtgatggaagaacctctgtgtttttagctgtggcacgaggagtctttgctctgg 60
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 648 tgccatgtgatggaagaacctctgtgtttttagctgtgggaggaggagtctttgctctgg 589

                                                                       
Query: 61  tgtgttgccttcatttgcagttgaagacaatgttgactaattaaaaagaagatatccctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tgtgttgccttcatttgcagttgaagacaatgttgactaattaaaaagaagatatccctt 529

                                                                       
Query: 121 tccttcctatccaagtgtctgagatcctgaattccttgaattgtggtggaaacgaggagg 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 528 tccttcctatccaagtgtctgagatcctgagttccttgaattgtggtggaatcgaggagg 469

                                                                       
Query: 181 atgaggacccctgggaccactgaggatgcatttattaaaaagcaatgcaacatattaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 atgaggacccctgggaccactgaggatgcatttattaaaaagcaatgcaacatattaagc 409

                                                                 
Query: 241 tatcagggacataccagtagatttcttgggatctcactgctgtagctttgagaa 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tatcagggacataccagtagatttcttgggatctcactgctgtagctttgagaa 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)