BAC Information

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BAC

Clone NameMSMg01-235N02
Chromosome10 (Build37)
Map Location 72,758,302 - 72,758,667
singlet/doubletsinglet
Overlap geneLOC432471
Upstream geneLOC100040505, Zwint, LOC544705
Downstream geneLOC100039981, LOC623191, Pcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235N02.T7 (MSMg01no235_n02.b1)MSMg01-235N02.TJ (MSMg01no235_n02.g1)
ACCAG401268AG401269
length742733
length of high quality
(start - end)		371 (70 - 440)586 (77 - 662)
definitionCHROMAT_FILE: MSMg01no235_n02.b1 PHD_FILE: MSMg01no235_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:14 2005CHROMAT_FILE: MSMg01no235_n02.g1 PHD_FILE: MSMg01no235_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGA
ATTCTCCACAGTTCCGCGAAAATCTGGGCATGCAGGGAACCCTGGGATGT
GCTCAAGTCAGTTCTTTTCCTTTTAGGTCCAGACCTGGAGTAGCTGGGTC
ATTGATAGTTCTGTCTCCCTTTCTGTGTTCAGCATCATGACTTTTAAGCT
ATTCTCTGCAATAGTTGTCTTAATTTATATTCTTGGCATGGATTGGTGAG
CTGATCTCTCTGTATATTCTGGCCAACACATTTTCAGCATCGCTGCAAAA
GAGACACCACTTGGCAAAGCAGATAAAGGACAGTACAGTAGAATCCTTAA
CTCTACCTCAGAGTATTGCTGAGTTAGAGTAACCAAGCATTAATAATGGT
GGGGATAGATGTAGCGTTATTTTAATATAATTTTTTTTACTCTCCCCCCC
CNCTTCTCCTTCTCCTTTTTTTTTCTCCTCCTCTTCTCTTCTCTTTTTTT
CCTTCTCTCTTCTCTCTCTCCCCTTTTCCTCTTCTTCCTTTCTCCTTCCC
TTCTTCTCCTTTTTCCTTTTTTTTCTTTTCTCTTCTTCCTCTCCTTTTCT
TTTTTTCTCTCCTCCCTTCCCCCTTTCTCTCCCTCTTCTTTCTTCCCCTT
TCTTTTTCCTATTTCTTTTTACTTCCANTCTTTTTTTTTCANCCCCCCCC
ACACACCACACCTTCCCCATATTTCCATAACCTCAAATCTTN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACTCCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCACCAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAGTATGTACTCACTGATAA
GTGGATATTAGCCCATAACCTAGGATACCCAAGATATAAGATACAATTTC
CTAAACACATGAAACTCAAGAAAAATGAAGACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_n02.b1 MSMg01no235_n02.b1 CHROMAT_FILE:
MSMg01no235_n02.b1 PHD_FILE: MSMg01no235_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:14 2005
         (371 letters)



>mm_chr10_72758101_72758871
          Length = 771

 Score =  677 bits (350), Expect = 0.0
 Identities = 362/366 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   aatctgggcatgcagggaaccctgggatgtgctcaagtcagttcttttccttttaggtcc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aatctgggcatgcagggaaccctgggatgtgctcaagtcagttcttttccttttaggtcc 261

                                                                       
Query: 62  agacctggagtagctgggtcattgatagttctgtctccctttctgtgttcagcatcatga 121
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agacgtggagtagctgggtcattgatagttctgtctccctttctgtgttcagcatcatga 321

                                                                       
Query: 122 cttttaagctattctctgcaatagttgtcttaatttatattcttggcatggattggtgag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cttttaagctattctctgcaatagttgtcttaatttatattcttggcatggattggtgag 381

                                                                       
Query: 182 ctgatctctctgtatattctggccaacacattttcagcatcgctgcaaaagagacaccac 241
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 382 ctgatctctctgtatattctggccaacacattttcagcatcgctgcaaaagagataccac 441

                                                                       
Query: 242 ttggcaaagcagataaaggacagtacagtagaatccttaactctacctcagagtattgct 301
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 442 ttggcaaagcagataaaggacagtacagtagaatccttaactccacctcagagtattgct 501

                                                                       
Query: 302 gagttagagtaaccaagcattaataatggtggggatagatgtagcgttattttaatataa 361
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 502 gagttagagtaaccaagcattaataatggtggggatagatgtagtgttattttaatataa 561

                 
Query: 362 tttttt 367
           ||||||
Sbjct: 562 tttttt 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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