BAC Information

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BAC

Clone NameMSMg01-236E19
Chromosome10 (Build37)
Map Location 83,845,207 - 83,845,436
singlet/doubletsinglet
Overlap geneNuak1
Upstream geneLOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik, LOC100041225, C230099D08Rik, LOC432482
Downstream geneCkap4, Tcp11l2, Polr3b, Rfx4, EG625690, Ric8b, Fhl4, AI597468, Mterfd3, Cry1, EG666974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236E19.T7 (MSMg01no236_e19.b1)MSMg01-236E19.TJ (MSMg01no236_e19.g1)
ACCAG401598AG401599
length769687
length of high quality
(start - end)
230 (179 - 408)236 (66 - 301)
definitionCHROMAT_FILE: MSMg01no236_e19.b1 PHD_FILE: MSMg01no236_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:50 2005CHROMAT_FILE: MSMg01no236_e19.g1 PHD_FILE: MSMg01no236_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTATTTCTCTTTTTTTTNCATCATTGCCCTACTCCCGGCAAANCCCCA
AACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATCATTTCCGCTACAATTGGGAGTTTGTGATACATGGCAGTT
GGGGTTACTATTATTTTATTTAACCATTAATTCCTTATACTTTTCAAAAC
ATAATGCATGTTTCAGTGACAAGTTTACTTCTTGGCCAGGGGCAGCTGCT
AAGGAGAGGGTGGTACAAAACTGTGGAAGCAGACACAGGGACTGAGAGTC
TGGTAGAGAAGGCAGACATGTAGGCATGTGTAGTATGTACAGATGTGTCT
ATGTTTACATGTGTGTGTGTATACTGTATACGTGCAGGTATAAACACAAT
GCTCTGAATGTATTTTACATAACACCCTTTACAAAACTTAAGAGAGTGAG
TGCACTAAGGAACTGAGGTTAGATCAGACACTTACGGGGGATGTGCATGC
TAGGGGGTGGATTCACACGCTCCACCTTATCGCAATCAGTGGTTCTCCTC
TTATTCTCACAATATGTCTGGAAGACAGGATAGGGAGAGATGCTGGGTTT
CTGTTTTCTGTCCCCATCCATGTCACGCAGATGGCGAGCGGGAGAGTTTA
GGCTGAAATGTAATGATTTAATATTTGGTGCTCTGCGTGTTTCATCTTGA
GCCAAATGAAGAAAATGTGGCGGCAGTGGTGGTGGTGTAGGTGGTGGAAG
TCATGTATTCCCACGGTGT
GTTCCGCGGAATTCCAGGACAGCCAGGACTATACAGAGAAACCCTGTCTC
AAAAATTTGAAACCCAAAAACCAAATCAAACCAAACCAAACCAAACCAAA
CCAAAAAAGAACAACCATACTGCCTTAAAGAAACAAACTAGCCAAATTGC
CTTAACGAATCAGAGATCAACTGGTCCCATTTGGAAAAAACTAAGACCAC
CAGAGATGCCTAAAAGAGATAATCTTCAACCACAGGTTGTGCAGTACAAT
CCAGGTTTTCAGCTTTGTTTTAGCTGCCTCCCATGCTGGAGTGAGCTTTG
TTTATGAACCCACCCCCCGAGTCATTTCTGCTTCTATAAGCAGCCCCTCC
CCCATACTCTAGTAAATAACTCCAATAAAATTCATTGGTTTACCTAGTTA
GGCTTTGGTGATATCCTTGCTTTGGCCTGTTGTCAAGTCTCTATCTGAGA
TAAGTAGATATTTGTCTGTGTCTCCACAGGAATATTGTTACACACCTCTG
TGGATCCATGTTGGAATGGGAAGGTTGGTTCCAGAAATTCTAATCGGAGC
ATTTTCACTACTAAGTGAAATATCCCGTCCTCATACCATAAGGGAAGATC
AGTGTCTACAACGTATAATGAACCCCATATCCCCTTTCTATGCTTTCCGT
CTAGATTTGTAAATACCACACAAACCAGACCTGTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_e19.b1 MSMg01no236_e19.b1 CHROMAT_FILE:
MSMg01no236_e19.b1 PHD_FILE: MSMg01no236_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:50 2005
         (230 letters)



>mm_chr10_83845098_83845727
          Length = 630

 Score =  445 bits (230), Expect = e-129
 Identities = 230/230 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattccttatacttttcaaaacataatgcatgtttcagtgacaagtttacttcttggcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aattccttatacttttcaaaacataatgcatgtttcagtgacaagtttacttcttggcca 280

                                                                       
Query: 61  ggggcagctgctaaggagagggtggtacaaaactgtggaagcagacacagggactgagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ggggcagctgctaaggagagggtggtacaaaactgtggaagcagacacagggactgagag 220

                                                                       
Query: 121 tctggtagagaaggcagacatgtaggcatgtgtagtatgtacagatgtgtctatgtttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tctggtagagaaggcagacatgtaggcatgtgtagtatgtacagatgtgtctatgtttac 160

                                                             
Query: 181 atgtgtgtgtgtatactgtatacgtgcaggtataaacacaatgctctgaa 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 atgtgtgtgtgtatactgtatacgtgcaggtataaacacaatgctctgaa 110


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)