Query= MSMg01no236_i14.b1 MSMg01no236_i14.b1 CHROMAT_FILE:
MSMg01no236_i14.b1 PHD_FILE: MSMg01no236_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:07 2005
(304 letters)
>mm_chr10_83781543_83782246
Length = 704
Score = 565 bits (292), Expect = e-165
Identities = 301/304 (99%)
Strand = Plus / Plus
Query: 1 ccagccttgtggaggtggaactcgcaccacacactatatcatgaatgaatcctgaggata 60
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ccagccttgtagaggtggaactcgcaccacacactatatcatggatgaatcctgaggata 260
Query: 61 gtattcgaagggaagtgagttgaacacaaaaagactaacattgtataaactacttccatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtattcgaagggaagtgagttgaacacaaaaagactaacattgtataaactacttccatg 320
Query: 121 aggtgcctagaaaagtcagggtcacaggaaatgaggtacagcatggctgctggggctgaa 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 aggtgcctagaaaagtcagggtcacaggatatgaggtacagcatggctgctggggctgaa 380
Query: 181 gaaagggggagcctgcagtgtgacttaacagatatagatattcagttccgcaggatggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaagggggagcctgcagtgtgacttaacagatatagatattcagttccgcaggatggaa 440
Query: 241 aagatgtggggatctcatgggttggttgagaggtggagatgatgctcaacaccccactgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagatgtggggatctcatgggttggttgagaggtggagatgatgctcaacaccccactgt 500
Query: 301 gcac 304
||||
Sbjct: 501 gcac 504
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space: 205025
Effective search space used: 205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_i14.g1 MSMg01no236_i14.g1 CHROMAT_FILE:
MSMg01no236_i14.g1 PHD_FILE: MSMg01no236_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:07 2005
(540 letters)
>mm_chr10_83949599_83950538
Length = 940
Score = 936 bits (484), Expect = 0.0
Identities = 523/540 (96%), Gaps = 7/540 (1%)
Strand = Plus / Minus
Query: 1 cactccctggtgactaagcattcaaatatatggagcctattagatctgttcttatttgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 cactccctggtgactaagcattcaaatatatggagcctattagatctgttcttatttgaa 478
Query: 61 ccaccacagtgactccaacatagaatgactaggaaagtctgtcataaacaatggattcag 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ccaccacagtgaccccaacatagaatgactaggaaagtctgtcataaacaatggattcag 418
Query: 121 atatcagctagaggaagaatagcctccagagtattataggagggcagttccattaataac 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 417 atatcagctagaggaagaatagcctccagggtattataggagggcagttccattaataac 358
Query: 181 agaggctgtggagaggaagccctcgtggcgttattaatcggtggaaagcctttttccttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agaggctgtggagaggaagccctcgtggcgttattaatcggtggaaagcctttttccttt 298
Query: 241 atttgaatggaaagtcacagaggcacgggacagtttttttttttttttgttttttataaa 300
||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||
Sbjct: 297 atttgaatggaaagtcacagaggcacggggcagattttttt-------gttttttataaa 245
Query: 301 tgacaactccaaacacggggggggggcagggaagggggttggaaccttctgatcttcatg 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tgacaactccaaacacgggggtggggcagggaagggggttggaaccttctgatcttcatg 185
Query: 361 ttgtaactccagggtttatgtactcacaagctagctttcaaatctcatgccttaaccctt 420
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 184 ttgtaactccagggttcatgtactcacaagctagttttcaaatctcatgccttagccctt 125
Query: 421 gtgggtctccagctgtcagagcttggaagtcttggtgactttttgaaactcctcctgtgg 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gtgggtccccagctgtcagagcttggaagtcttggtgactttttgaaactcctcctgtgg 65
Query: 481 tcagacccaggagttctcccagtgttggcaatctgtctcctgcaattactgccctcggcc 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 64 tcagacccaggagttctcccagtgttggcaacctgtctcctgcaattactgccctcggcc 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
