Query= MSMg01no236_o08.b1 MSMg01no236_o08.b1 CHROMAT_FILE:
MSMg01no236_o08.b1 PHD_FILE: MSMg01no236_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:34 2005
(604 letters)
>mm_chr10_55335943_55336946
Length = 1004
Score = 835 bits (432), Expect = 0.0
Identities = 454/466 (97%), Gaps = 8/466 (1%)
Strand = Plus / Minus
Query: 145 atttttaacataagtgtgccatatatattttaccttga--------agttgaagctgaaa 196
|||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 565 atttttaacataagtgtgccatatatattttaccttgaagttgaagagttgaagctgaaa 506
Query: 197 actagtttggataagcaaagcatttgagggcatggtaatatctgtgagatttttattaat 256
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 505 agtagtttggataagcaaagcatttgtgggcatggtaatatctgtgagatttttattaat 446
Query: 257 aatgatttactgatataaactaagaaatgtatggatcttacaagatatacatataacttg 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatgatttactgatataaactaagaaatgtatggatcttacaagatatacatataacttg 386
Query: 317 tactttaaaatttatatatttatttacttaatggagtcatgaatgtgaaggtcagaggac 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tactttaaaatttatatatttatttacttaatggagtcatgaatgtgaaggtcagaggac 326
Query: 377 aactgtagtggtttgttctctgcactgtggaggttctaagatctaattcaggttgtcagg 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aactgtagtggtttgttctctgcactgtggaggttctaagatctaattcaggttgtcagg 266
Query: 437 tttgggagcaagtacctttatgagccgagtcatctcacagcccttaacttttatttttta 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgggagcaagtacctttatgagccgagtcatctcacagcccttaacttttatttttta 206
Query: 497 ataaatagtctgtgaaaggggatgggaggtctatattttgaagaattactctagattgct 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ataaatagtctgtgaaaggggatgggaggtctatattttgaagaattactctagattgct 146
Query: 557 cccatcttagcattttaaattcccattatgctaacaaagatcacca 602
|||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 gccattttagcattttaaattcccattatgctaacaaagatcacca 100
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_o08.g1 MSMg01no236_o08.g1 CHROMAT_FILE:
MSMg01no236_o08.g1 PHD_FILE: MSMg01no236_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:34 2005
(584 letters)
>mm_chr10_55256060_55257043
Length = 984
Score = 1044 bits (540), Expect = 0.0
Identities = 579/606 (95%), Gaps = 22/606 (3%)
Strand = Plus / Plus
Query: 1 cagaaagtttgtgctctaagggccttgagagcgcagtgttttaaccataatctgcaggga 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 cagaaagtttgtgctctaagggccttgagagcgcagtgttttaaggataatctgcaggga 260
Query: 61 ccagaagtcccagtaatgcatagttggtttgccttcccacatctttctcttcattacctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagaagtcccagtaatgcatagttggtttgccttcccacatctttctcttcattacctt 320
Query: 121 ttaccttacctttgctgtattaactgtttaatatgctgatagagaatgcacagcaagtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaccttacctttgctgtattaactgtttaatatgctgatagagaatgcacagcaagtta 380
Query: 181 gaaatacatccgatagacctgagagcatggtgttctatgaagaattttcagagaagattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaatacatccgatagacctgagagcatggtgttctatgaagaattttcagagaagattt 440
Query: 241 ttagctaatatactaggaccagtcttgtgcaaataataatggaaagtatgggaaagagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagctaatatactaggaccagtcttgtgcaaataataatggaaagtatgggaaagagca 500
Query: 301 tgaaaggagattcagtgaataggttcagcatgtttactgctgcacttgaacaagctatag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaaaggagattcagtgaataggttcagcatgtttactgctgcacttgaacaagctatag 560
Query: 361 tcattttgggaaaagtgaacttagaatgaaaaaaagcttccatcagattggctggtgggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcattttgggaaaagtgaacttagaatgaaaaaaagcttccatcagattggctggtgggt 620
Query: 421 atgtggtgattttttttttttttttttg----------------------atgactgatg 458
||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 atgtggtgatttttttttttttttttttttttttttttttttttttttttatgactgatg 680
Query: 459 tggcaggaaccagttcacagttagtgccatccctggcttgatggtgttatttactataag 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggcaggaaccagttcacagttagtgccatccctggcttgatggtgttatttactataag 740
Query: 519 aaagtaggctgagcaagccatggaacataagcctgtaaggctaggtcctccaaggtttct 578
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 741 aaagtacgctgagcaagccatggaacataagcctgtaaggctaggtcctccaaggcttct 800
Query: 579 gtatca 584
||||||
Sbjct: 801 gtatca 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
