Query= MSMg01no236_o20.b1 MSMg01no236_o20.b1 CHROMAT_FILE:
MSMg01no236_o20.b1 PHD_FILE: MSMg01no236_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:37 2005
(713 letters)
>mm_chr10_84899510_84900622
Length = 1113
Score = 1266 bits (655), Expect = 0.0
Identities = 697/713 (97%), Gaps = 5/713 (0%)
Strand = Plus / Minus
Query: 5 gaattccaggaactttgcaca----ctctggcttctgcaggcaccatagacacatggtaa 60
|||||||||||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct: 1019 gaattccaggaactctg-acactctctctggcttctgcaggcaccatagacacatggtaa 961
Query: 61 catagacatacatgcaggtgcaacacccgtatatgataaaatataaaaatttaagagggt 120
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 960 catagacatacatgcaggtgaaacacccgtatatgataaaatataaaaatttaagagggc 901
Query: 121 atataacagtaggtaggtggaggggaacaggtgtaattcactgtggtgaactctagggag 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 atataacagtaggtaggttgaggggaacaggtgtaattcactgtggtgaactctagggag 841
Query: 181 gtgactctggtggccacaggaagggagaaagcctctctggggagtgttcctggatgtttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 gtgactctggtggccacaggaagggagaaagcctctctggggagtgttcctggatgtttt 781
Query: 241 ccctggaggcctggggctctggaagaggccagcatggaaatctgttctccggctccatta 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 780 ccctggaggcctggggctctggaagaggccagcatggaaatctgttctccagctccatta 721
Query: 301 cagcaacagtatggaaaacttgagtgtgcgtgaccagtaaagttcgccagggggctcccc 360
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 720 cagcaacagtatggaaaacaagagtgtgcgtgacaagtaaagttcgccagggggctcccc 661
Query: 361 accactgtgttcactcctacatggaaaggcagacctgggtttggattcagccccgccatc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 660 accactgtgttcactcctacatggaaaggcagacctgggtttggattcagccccaccatc 601
Query: 421 cagggagctgatggatgaatcattcaacacagtatctctatcacctcctcagtttatcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 cagggagctgatggatgaatcattcaacacagtatctctatcacctcctcagtttatcta 541
Query: 481 ttgattaaagtaataattgagtgaattaataacaaattcattttcttttaatggtctcta 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 atgattaaagtaataattgagtgaattaataacaaattcattttcttttaatggtctcta 481
Query: 541 tgtcctccaccacctggcgctgagttcattctgagagagggctcttgctctccatgtcta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgtcctccaccacctggcgctgagttcattctgagagagggctcttgctctccatgtcta 421
Query: 601 gcaactgtatgggcattcagtagaagcttataaatatttttatgggctacttacttatcc 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gcaactgtatgagcattcagtagaagcttataaatatttttatgggctacttacttatcc 361
Query: 661 agaactacttacatgcactcctttcagatacaactctctaagtacatttatct 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 agaactacttacatgcactcctttcagatacaactctctaagtacatttatct 308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1113
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1103
Effective search space: 775409
Effective search space used: 775409
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no236_o20.g1 MSMg01no236_o20.g1 CHROMAT_FILE:
MSMg01no236_o20.g1 PHD_FILE: MSMg01no236_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:37 2005
(287 letters)
>mm_chr10_84741784_84742470
Length = 687
Score = 516 bits (267), Expect = e-151
Identities = 281/287 (97%), Gaps = 3/287 (1%)
Strand = Plus / Plus
Query: 1 aatttcaaaaacagcctcacaaggctggttaaacaaaaatccccattgaccctcatggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 aatttcaaaaacagcctcacaaggctggttaaacaaaaatccccattgaaaatcatggcc 260
Query: 61 cagccaaccaatcaagtcacctttagaagttagtaactttcagctgaccttggtggaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagccaaccaatcaagtcacctttagaagttagtaactttcagctgaccttggtggaagc 320
Query: 121 cggaaccacagttataactctggcatttgactttgtttttttttttttttttttttaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 cggaaccacagttataactctggcatttgactttgtttttttttttttttttt---aaga 377
Query: 181 tcaaactcctagagggtaagaaagccgctcttgctcgaaattaggaaccacctcctagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tcaaactcctagagggtaagaaagccgctcttgctcgaaattaggaaccacctcctagtc 437
Query: 241 agacctctctttagaactgctgcaatatcttcccatctgattgacct 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agacctctctttagaactgctgcaatatcttcccatctgattgacct 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
