BAC Information

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BAC

Clone NameMSMg01-237E02
Chromosome10 (Build37)
Map Location 105,145,479 - 105,146,131
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042383, Tmtc2, EG627573
Downstream geneBC067068, Ccdc59, EG667758, EG639162, Ppfia2, Olfr1556-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237E02.T7 (MSMg01no237_e02.b1)MSMg01-237E02.TJ (MSMg01no237_e02.g1)
ACCAG402256AG402257
length728730
length of high quality
(start - end)
623 (44 - 666)654 (77 - 730)
definitionCHROMAT_FILE: MSMg01no237_e02.b1 PHD_FILE: MSMg01no237_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:02 2005CHROMAT_FILE: MSMg01no237_e02.g1 PHD_FILE: MSMg01no237_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAAAGAGGATCCGCGG
AATTCCTGATCTTTCTAAAACTTTTATCATGAATGGGTGTTGGATCTTGT
CAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTG
AGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCA
TCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTT
TAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCA
TCGATATTCATAAGAGAAATTTTTCTGAAGTTCTCTATCTTTGTTGGGTC
TTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGG
GTAGAGTACCTTCTACTTCTATTTTGTGAAAAAGTTTGTGCAGAATTGGA
ATTAGATCTTCTTTGAAGGTCTGGTAGAACTCTGCACTAAACCCATCTGG
TCCTGGGCTTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATTTCTT
TAGGTGATATGGGACTGTTTAGATGGTCAACTTGATCCTGATTCAACTTT
GGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCAG
TTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGATGGCGCTTTTGCATT
TCTTCAGGATCTGCTGTTATGTCTCCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTCTTTATAACCGTTTCAGGCGA
TACTTAATTATCCCAGGAGGAAATGGATCATTTGGAACTTCATACTAATT
TAGACGGCTATGCCTCATTTTTAGGGATGAGGTGTTCTCACTTGTGTTTT
CTTTCTTTCTGGCTGGCCTGGAACTTGCTACGGAGACCAAGCTGCTCTCA
GACTTGTAGTGATCCCCTTGTCTTCTTGTCCTGAGTGCTGAGATGACAAG
TGTGGGCTCCATGCCTAGCACGTCTTGCTCAATTTTGAGCTGTCCATTTT
GTAGATCTTCAGAGAAGTCGCAGTACATCTATAACCATGACAAGATTATA
ATTGCATTCGCATTTTGGATCTTCTGCTTGTTTTATTTGTATCAGTGGAG
ATTTTGAGTCTTTTCCTAAATTTTCTAATTTTACATTTTTCTAAATAAAT
CAACATATTTATTTTTTGTTACTGTGCTTGGTCTCAAACTTAATGCTGTC
TTTGCCCATGTTAGGCAAGTGGACTTCCGCTGAGCTAAAGAAAATAATTT
AAAAGCCAGTGGATAACTGCTCTTGAAGCAAACAAAAAGAATTTTTAAAA
ACTAACCATTTTTAGTATACTACGGATGTCTGTTTTTTTCCTCCTTACTC
TTTTTATCCCAAAGTACATTAAAAGTGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_e02.g1 MSMg01no237_e02.g1 CHROMAT_FILE:
MSMg01no237_e02.g1 PHD_FILE: MSMg01no237_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:02 2005
         (654 letters)



>mm_chr10_105145279_105146331
          Length = 1053

 Score = 1249 bits (646), Expect = 0.0
 Identities = 652/654 (99%), Gaps = 1/654 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctttataaccgtttcaggcgatacttaattatcccaggaggaaatggatcatttgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctttataaccgtttcaggcgatacttaattatcccaggaggaaatggatcatttgga 260

                                                                       
Query: 61  acttcatactaatttagacggctatgcctcatttttagggatgaggtgttctcacttgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttcatactaatttagacggctatgcctcatttttagggatgaggtgttctcacttgtg 320

                                                                       
Query: 121 ttttctttctttctggctggcctggaacttgctacggagaccaagctgctctcagacttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttctttctttctggctggcctggaacttgctacggagaccaagctgctctcagacttg 380

                                                                       
Query: 181 tagtgatccccttgtcttcttgtcctgagtgctgagatgacaagtgtgggctccatgcct 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtgatccccttgtctccttgtcctgagtgctgagatgacaagtgtgggctccatgcct 440

                                                                       
Query: 241 agcacgtcttgctcaattttgagctgtccattttgtagatcttcagagaagtcgcagtac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcacgtcttgctcaattttgagctgtccattttgtagatcttcagagaagtcgcagtac 500

                                                                       
Query: 301 atctataaccatgacaagattataattgcattcgcattttggatcttctgcttgttttat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctataaccatgacaagattataattgcattcgcattttggatcttctgcttgttttat 560

                                                                       
Query: 361 ttgtatcagtggagattttgagtcttttcctaaattttctaattttacatttttctaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtatcagtggagattttgagtcttttcctaaattttctaattttacatttttctaaat 620

                                                                       
Query: 421 aaatcaacatatttattttttgttactgtgcttggtctcaaacttaatgctgtctttgcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatcaacatatttattttttgttactgtgcttggtctcaaacttaatgctgtctttgcc 680

                                                                       
Query: 481 catgttaggcaagtggacttccgctgagctaaagaaaataatttaaaagccagtggataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catgttaggcaagtggacttccgctgagctaaagaaaataatttaaaagccagtggataa 740

                                                                       
Query: 541 ctgctcttgaagcaaacaaaaagaatttttaaaaactaaccatttttagtatactacgga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgctcttgaagcaaacaaaaagaatttttaaaaactaaccatttttagtatactacgga 800

                                                                 
Query: 601 tgtctgtttttttcctccttactctttttatcccaaagtacattaaaagtgtat 654
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgtctgtttttt-cctccttactctttttatcccaaagtacattaaaagtgtat 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1053
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1043
Effective search space:   671692
Effective search space used:   671692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)