BAC Information

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BAC

Clone NameMSMg01-237G09
Chromosome10 (Build37)
Map Location 125,460,490 - 125,461,067
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc16a7, LOC100042987, EG668313, LOC100042992, LOC668317, LOC100042994, Lrig3
Downstream geneLOC100043547, LOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237G09.T7 (MSMg01no237_g09.b1)MSMg01-237G09.TJ (MSMg01no237_g09.g1)
ACCAG402359AG402360
length703709
length of high quality
(start - end)
629 (45 - 673)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no237_g09.b1 PHD_FILE: MSMg01no237_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:13 2005CHROMAT_FILE: MSMg01no237_g09.g1 PHD_FILE: MSMg01no237_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGTTGCCCTCTAATGTAACATTTTATTCCCTACCACTGATATTGC
AACATTTGTTACTTTGCACCATGCCACACACCAGTCATTTGGCTTAATTT
GTTTACTTCACAATACCCTGAATGATAGATGTAAGTTTTATTTATTTGGT
CATTACATTTCTGCAGGTGGTACAGTACGCATTAAAAAGTTCTCAGCATA
CTTTAAATGAAGATTAGGCAACTTCATACATTTTAGATCATAAGGTTTCT
TTTTTTTCACCCTGATGAGGTGTTTTCCAGAACATTCCACTTCATCTGTG
TGTCCCCTTCCCCTGGTTTCTCTTACCTGCATCTCTGTAAATATACAACC
TCTACACACAGACCCAATTTTCATCTAGTGCAGTGGTTCTCAACCCCAAA
TGCTGTAACCTTTTAATACAGTTCCTGATGTTAGGGTGATCCTCAACTGT
AAAATTACTTCATTAGTACTTCATAACTGTAATTTTGGTAGTTATGAGTG
GTAATATAAGCATCTGACATGCAGGATATCTGATATGTGACTCCCAAAGG
GATCACAATACACAGGTTGTCAACCACTGATATAGTGGTTTTCTACCCTC
TTCCTTAAGACTATTCTGTATGGCACATGGGTGAAACTTGAGAATATCAT
CCT
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAATGTTGGGTTAGAAAAGCCAC
TGAGTTTTGAGAGTTCTGTCCGCTGTTCTGTAGGAGATCAGAGTATAAGA
ATGTTGAGAGCAGTATAGAGGATTCAGGCCCGGATTGTGATGTTTCAGAG
GAAAGCAAAGACTCCATTAGACCTTTGCTGTAATGAGTCTGTGGTTCTGG
TCAGCTGGAGCTGGAGAATCAGCTGTGATTAACAAAAGTCCAGACCCACT
GAAATAAAACCTTAGTTTGTTCAGACAATTCATGCTGATAGCTAGAGCTA
AGAAATTGTTGTTGATTACCCGCCCCACCAGCATCATTGAGGTGACATCT
TGTAGGGAGTATTTTGTCAGAGCTAGCACTATATTCCAGAGTTAGTCAAG
GTTGTACCTCATGCTGGCATCTGAACTTGGTAGTGTAAGAGTCACCTAGG
AAGTACTAGGTTTGAAGACGTGAAAGGGTCATGAAACGCAGCTGAGGCTT
GGCACTGTGAGAGGCAACGACAGGCTACTGCAGATGGTAGACCCTCAACA
GAAGTTGAAACTCCAGGGCTAAAGGGGTATGGAGAAAGACGGAGACCTAT
AGAGGCTACTAGCGATGGTGCAACCCAGATGCAGCAGAAACCCTAGCATT
TTGGAGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_g09.b1 MSMg01no237_g09.b1 CHROMAT_FILE:
MSMg01no237_g09.b1 PHD_FILE: MSMg01no237_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:13 2005
         (629 letters)



>mm_chr10_125460490_125461510
          Length = 1021

 Score = 1017 bits (526), Expect = 0.0
 Identities = 568/586 (96%), Gaps = 8/586 (1%)
 Strand = Plus / Minus

                                                                       
Query: 20  tctaatgtaacattttattccctaccactgatattgcaacatttgttactttgcaccatg 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 578 tctaatgtaacattttattccctaccactgatattgcaacatttgttactttgtagcatg 519

                                                                       
Query: 80  ccacacaccagtcatttggcttaatttgtttacttcacaataccctgaatgatagatgta 139
           |||||||||||||||||||||||    ||||||||||||||||||||||||||||| |||
Sbjct: 518 ccacacaccagtcatttggctta----gtttacttcacaataccctgaatgatagaggta 463

                                                                       
Query: 140 agttttatttatttggtcattacatttctgcaggtggtacagtacgcattaaaaagttct 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 462 agttttatttatttggtcattacatttctgcaggtggtacagtacgcattaaaaagtact 403

                                                                       
Query: 200 cagcatactttaaatgaagattaggcaacttcatacattttagatcataaggtttctttt 259
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 402 cagcatactttaaatgaagattaggcaacttcatacattttagatcataaagtttctttt 343

                                                                       
Query: 260 ttttcaccctgatgaggtgttttccagaacattccacttcatctgtgtgtccccttcccc 319
           || ||||||||||||||||||||||||||||||||||    |||||||||||||||||||
Sbjct: 342 ttatcaccctgatgaggtgttttccagaacattccac----tctgtgtgtccccttcccc 287

                                                                       
Query: 320 tggtttctcttacctgcatctctgtaaatatacaacctctacacacagacccaattttca 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tggtttctcttacctgcatctctgtaaatatacaacctctacacacagacccaattttca 227

                                                                       
Query: 380 tctagtgcagtggttctcaaccccaaatgctgtaaccttttaatacagttcctgatgtta 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tctagtgcagtggttctcaaccccaaatgctgtaaccttttaatacagttcctgatgtta 167

                                                                       
Query: 440 gggtgatcctcaactgtaaaattacttcattagtacttcataactgtaattttggtagtt 499
           |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 166 gggtgatcctcaaccgtaaaattacttcattactacttcataactgtaattttggtagtt 107

                                                                       
Query: 500 atgagtggtaatataagcatctgacatgcaggatatctgatatgtgactcccaaagggat 559
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 atgagtggtaatataaacatctgacatgcaggatatctgatatgtgactcccaaagggat 47

                                                         
Query: 560 cacaatacacaggttgtcaaccactgatatagtggttttctaccct 605
           |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 46  cacaatacacaggttgtcaatcactgatatagtggttttctaccct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1021
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1011
Effective search space:   625809
Effective search space used:   625809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)