BAC Information

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BAC

Clone NameMSMg01-237J08
Chromosome10 (Build37)
Map Location 79,281,282 - 79,281,861
singlet/doubletsinglet
Overlap genePalm
Upstream geneOlfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1
Downstream gene9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237J08.T7 (MSMg01no237_j08.b1)MSMg01-237J08.TJ (MSMg01no237_j08.g1)
ACCAG402491AG402492
length718717
length of high quality
(start - end)		580 (75 - 654)612 (45 - 656)
definitionCHROMAT_FILE: MSMg01no237_j08.b1 PHD_FILE: MSMg01no237_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:27 2005CHROMAT_FILE: MSMg01no237_j08.g1 PHD_FILE: MSMg01no237_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCATCTTAGAGGCCCAGGCCCATGGG
AGAGATTCGACCCCACCTTCTGCACCTCCAGTGTCACCAAGAGACCAGGC
ACAGGGACTCTTCTCCAGGGGTTGGGAAGCTAACATCTGGGGGTGGTAGC
CCTGACCCTTCATTAGATTCCTGGAACCACCCTGTCTGTGCCTCCTGAAG
TCTAGGATCCCAGAGGAGTTTGCAGAGCTGAGGTTCAGGTGTGCTCTGGG
GCTGTAGACAGCTGTTCCCGTCGGTGAGGAGACATTGTCCTTATTTAGAT
CCTCATTACTCAGAAAGTGACAGCCAGGCCTGATAGTGCATACCTGTTGT
CCCAGCACCCAGGAAGCTGGGGCAAGAGAGCGTGGTAATCCTCCTACCTC
AGTCTCCTTGAGCGCTGGAATGACAGATGTTTACCACCAGAGCTGGCTGT
CAAGGCTGGTATTTGCCTCAGCCTCCAGGCTCTGCCCCAGCGCCGGCCTG
TTAACACTCTCTCTGTGTCCCCACGCAGTGGTCCATGCCGTGGACGGCAT
CGCTGAGAACGGGATCCAGCCTCTAAGTTCCTCCGAGGTGGACGAACTCA
TTCACAAGGCCGATGAGGTCACACTGAGCGAGGCAGGGTCCACAGCTGGG
CCAGCGGAGCCTCGGGGA

TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCAAAACCTAAGATGGAGGCTCCGGTATGATCCCGAGAAACCACTT
CTTGGCATGTGTCCAAAGGCCGCACTATCCAGCTGCACAGGGACCTGCTC
AGCCCTGTCTGTCTTTACTGCTCCATGCATAAGGGCTAAGAAATGGAAAC
TGATTTCAGACCCCTGGACAGGGGGCTGAGATGCCCATTTTACACACCAA
AGCAGACCTGCCCTCCAGGTTCTCCCAACATCCCTCAGTGCCTGCCTGGC
ATGCCCTGCCCCAACCCCGGGGCTGCCCTTACCCCAGAGGCTCCTCTCTA
CAGAATCCAGACATCTTGGTCTCTTGCTCTCTTCTTTTTCTTCTTTTTCT
CTCCCTCCCCCTTTCCCCATGGCAACTGCACTGACCTCAGTGAGGCCAGG
GAACTCACCTGGGGACAGCTCCAATAAGCCTGCCTTTAATATAATCTAAT
CTGGTGTAAATTGGCTCACTTCACTGGCAGTGGAAAAAGAACCCATCAGA
AACAACCCAAATGCTCTTCAACCAATAAATAGATACTGAAAAATGTTGTC
TATATATACTGTGGGATATTATTCATCTGTCGGGAAAAACAATCATGACA
CTTGTAGGTTCAGTGACTAGAACTCCAAAAGATGGCATTGAGCACGGGAG
CGCAGACCCAGAAAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_j08.b1 MSMg01no237_j08.b1 CHROMAT_FILE:
MSMg01no237_j08.b1 PHD_FILE: MSMg01no237_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:27 2005
         (580 letters)



>mm_chr10_79281082_79282061
          Length = 980

 Score = 1067 bits (552), Expect = 0.0
 Identities = 573/580 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatcttagaggcccaggcccatgggagagattcgaccccaccttctgcacctccagtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatcttagaggcccaggcccatgggagagattcgaccccaccttctgcacctccagtgt 260

                                                                       
Query: 61  caccaagagaccaggcacagggactcttctccaggggttgggaagctaacatctgggggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 caccaagagaccaggcacagggactcttctccaggggttgggaagctaacatctgagggt 320

                                                                       
Query: 121 ggtagccctgacccttcattagattcctggaaccaccctgtctgtgcctcctgaagtcta 180
           ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 321 ggtagccctgacccttcattagattcctggaaccaccctatctgcgcctcctgaagtcta 380

                                                                       
Query: 181 ggatcccagaggagtttgcagagctgaggttcaggtgtgctctggggctgtagacagctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggatcccagaggagtttgcagagctgaggttcaggtgtgctctggggctgtagacagctg 440

                                                                       
Query: 241 ttcccgtcggtgaggagacattgtccttatttagatcctcattactcagaaagtgacagc 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 ttcccgtcggtgaggagacattgtccttatttagatcctcataactcagaaagtgacagc 500

                                                                       
Query: 301 caggcctgatagtgcatacctgttgtcccagcacccaggaagctggggcaagagagcgtg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 caggcctgatagtgcatacctgttgtcccagcacccaggaagctggggcaggagagcgtg 560

                                                                       
Query: 361 gtaatcctcctacctcagtctccttgagcgctggaatgacagatgtttaccaccagagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaatcctcctacctcagtctccttgagcgctggaatgacagatgtttaccaccagagct 620

                                                                       
Query: 421 ggctgtcaaggctggtatttgcctcagcctccaggctctgccccagcgccggcctgttaa 480
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 621 ggctgtcaaggctggtatttgcctcagcctccgggctctgccccagcgccggcctgctaa 680

                                                                       
Query: 481 cactctctctgtgtccccacgcagtggtccatgccgtggacggcatcgctgagaacggga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cactctctctgtgtccccacgcagtggtccatgccgtggacggcatcgctgagaacggga 740

                                                   
Query: 541 tccagcctctaagttcctccgaggtggacgaactcattca 580
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccagcctctaagttcctccgaggtggacgaactcattca 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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