BAC Information

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BAC

Clone NameMSMg01-237N20
Chromosome10 (Build37)
Map Location 116,451,379 - 116,451,693
singlet/doubletsinglet
Overlap geneBest3
Upstream genePtprr, 4933416C03Rik, Ptprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741
Downstream geneLrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237N20.T7 (MSMg01no237_n20.b1)MSMg01-237N20.TJ (MSMg01no237_n20.g1)
ACCAG402689AG402690
length693683
length of high quality
(start - end)
232 (124 - 355)315 (36 - 350)
definitionCHROMAT_FILE: MSMg01no237_n20.b1 PHD_FILE: MSMg01no237_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:47 2005CHROMAT_FILE: MSMg01no237_n20.g1 PHD_FILE: MSMg01no237_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAAATTTAGGTGA
ACTATAGAATGCCCAAAGAAAATCCTGGAGAGCTGCTGGTCTTTAAGACG
GTGGTTGTAATACTGGTCCCCAGATGCCTCAGCAACAGGATAAGTGAATT
TGCCAGCCAGAGTGAGGACAAGCAGGCAAAAACCAAGTGCTTCCTCCTTT
CTTGTTATTTTATTTGGGCTGCCACTAGAAGGTGTGGCCCTGGTTTAGGG
TGGGTCTTCCTGCCTCAAACGATCTGATCAAGAAAGTGCCTTACAGGCAT
GCCCAGAAACTTGTGTTTTAGTTGATTCCAGTTGGCAACTGTGATTAGCT
CTCACTTTTTTATTCCTTGTCCACTTGATACATAATCACTTTTCCTTATG
CCATACTATTTTCCAAATGAAAACAATAACCAGGTCATAATTCTTCCTAA
CATGAGATAACTATCTTATGTATAATCACAAACTCATAGAGATTTCAGAA
TAGATGGCAGTGTACCTTGAGGGATGCTTAGTCTTTCAGTGTCTCATAAG
AAATGCAGCAACCACTGTCAATGATTTCACATTACATGATAAGGAAATAG
GGAAAAGAAACATAAACATGAGATACATACATACATACATATACATATAT
GTGTGTGTATATCTGTGTGTATATATATATATGAGCATATATA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTCT
AGCTAGAAATGGAAAAATCTAAGACTTAATTTGGAAAACGTCATCATTTG
TGTTCAAAATTATGACTCTCACTTGTCTTCCTGACAGAACTTCTAAGCAT
GTTTACCTTGCCACAATCCCCATCTTCTAATTATACAAACTTGCACTCAA
TGGATACAAAGTATCCAAGCTGGCACAGTAGATGATAGTAATTATCAAAT
ACAGGAAAGTGCATATCATAGCAAGCAAAGATATTGCTAAAGTTCATTAA
TTATATTTTTTTCCATTTTACCAAAATACTGGTATTTTCAGTAATCATTT
CTTACCCACCACCCCCAAGTAATTTATTTTAGCTTTATAAGAAAAGACAT
AGTCTGCTAGATATGATTGCATGCTTATGTTATAAACCAAAAAAAATAGC
TCAAGTCCTGAATCACTCACTTCCTCAAAAATGTACTCTTGGCACATTGA
TCTCCTTTCCCCTAATGTGCCAGAAAGGAAGGAGCAGCAAGCCTCCCATA
GAAATGAATGTACGCTAGGTTCATCACTGCCACAGGGACTCTTCCGCCTG
CCCAGACGGGGTCACCTTGGGTGCTCAGTCCTCACCTTTAAATAGTATCC
GGTGTGCACGGTGTAATTATCTTTGCCAAGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_n20.g1 MSMg01no237_n20.g1 CHROMAT_FILE:
MSMg01no237_n20.g1 PHD_FILE: MSMg01no237_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:47 2005
         (315 letters)



>mm_chr10_116451175_116451889
          Length = 715

 Score =  493 bits (255), Expect = e-144
 Identities = 298/319 (93%), Gaps = 12/319 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttctagctagaaatggaaaaatctaagacttaatttggaaaacgtcatcattt 64
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttctagctagaaatggaaaagtctaagacttaatttggaaaacgtcatcattt 264

                                                                       
Query: 65  gtgttcaaaattatgactctcacttgtcttcctgacagaacttctaagcatgtttacctt 124
           ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 gtgttcaaaatgatgactctcacttgtctttctgacagaacttctaagcatgtttacctt 324

                                                                       
Query: 125 gccacaatccccatcttctaattatacaaacttgcactcaatggatacaaagtatccaag 184
           |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 325 gccacaatccccatcttctaattatacaaatttgcactcaatgtatacaaagtatccaag 384

                                                                       
Query: 185 ctggcacagtagatgatagtaattatcaaatacaggaaagtgcatatcatagcaagcaaa 244
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctggcacagtagataatagtaattatcaaatacaggaaagtgcatatcatagcaagcaaa 444

                                                                       
Query: 245 gatattgctaaagttcattaattatatttttttccattttaccaaaata--------ctg 296
           |||||||||||||||||||| |||||||||||||||||    |||  ||        |||
Sbjct: 445 gatattgctaaagttcattacttatatttttttccatt----caatgtatttctagcctg 500

                              
Query: 297 gtattttcagtaatcattt 315
           |||||||||||||||||||
Sbjct: 501 gtattttcagtaatcattt 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)