BAC Information

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BAC

Clone NameMSMg01-260F14
Chromosome10 (Build37)
Map Location 33,653,070 - 33,653,695
singlet/doubletsinglet
Overlap gene2700019D07Rik
Upstream geneEG667761, Trdn, A330019N05Rik, LOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3
Downstream geneLOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk, LOC667824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260F14.T7 (MSMg01no260_f14.b1)MSMg01-260F14.TJ (MSMg01no260_f14.g1)
ACCAG403039AG403040
length758762
length of high quality
(start - end)
628 (42 - 669)627 (72 - 698)
definitionCHROMAT_FILE: MSMg01no260_f14.b1 PHD_FILE: MSMg01no260_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:25 2005CHROMAT_FILE: MSMg01no260_f14.g1 PHD_FILE: MSMg01no260_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTTGGCTCTGTACCCCATCTTTTAGTAGGGTTATTAGTTTTGCTG
CTGTCTAACTTCCTGAGTTCTTTGTGTATATTGTATAGAGTTGGTAAAGA
TAGATCGTATCCCAATCTGTTGGTGGCCTTTTTGTCCTATTGACAGTGTC
CTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTC
TTGAGCCTGAGCCATTGGTGTTCTGTTCAGGAAAATTTCCCCTGTGCCCA
TGTGCTCGAGGCTCTTCCCCACTGTTTTTTCTATTACTTTCAGTGTCTCT
GGTTTTATGTGGAGATCCTTGATCCACTTGGACTTGAGCTTTGTACAAGG
AGATAATGGACCAATCTGCATTCTTCTACATGCTAACTGCCCGTTGAACC
AGCACCATTTGTTGAAAATGCTGTTCTTTTTCCACTGGGTGGTTTTAGCT
CCTTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTC
TTCAATTCTATTCCACTGATCTTCCTGCCTGTCACTGTACCATACAGTTT
TTATCACAATTGCTCTGTAGTACAGCTTGTGGTCAGGCATGGTGATTCTA
ACAGAAGTTCTTTTATTGTGGAGAATTGTTTTGATATCCAAGGCTTGTTA
TTCCAGATAAAATTGTTCTTCTCTAACTCTATGATAAATTGAGCTGGCAA
TTTTGTGN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGGCTAGCCTGTTCTACAGAGTAAGTTC
TAGGACAGCCACGGCTATACAGAGAAACCCTGTGTCAGAAAAATAAAAAA
ATAAAAAATAAAAAGGCTAGTCATAAGAATGCAACTGTTTCCATATAAAA
TGTATTAGTACCCTAACAGAGATACAAAAACATAATTGGAAAAAAAAAAA
AACAAGACAAGCAAACAAATAAAACAATAACCAGAAAAAGTGGCATACAT
TCTTGAGTAAAGCAGATCTGATTATTAATATTAGCTTGCCAACTATGCAA
GTCTTAAGAATGTTATATACACTCTAAGTGTCAAGTACATAACAGTGTTC
ATTTGGACCCAGAAGAAACACAGTATATAAAGCTTTTAGTATTCAAAATG
AAATGAGTAATACGGTGGCCATTATACTTATGAGGTAACTGAACCTTTGA
ATTGTAGTGTTTCCATTTGAAATGTCCTGTAAAGTATAAAATAATAACAG
AGTTGATATATTTTACAAAGAATATAAAATATTTCAATTAATAATCCTTG
TGAGGTGAACATGCTAACTACAAAACTATGGAAAAACCCCTCTTGATACT
GACAACTTTTAAAATGGTACCATAGACACTGCATTTAAATTATTAGAAGA
GATTTAGACTCCTGATAGTTCAACGCCTGATAGTTCATCAGAAGATTTAT
AAATTTTACTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_f14.g1 MSMg01no260_f14.g1 CHROMAT_FILE:
MSMg01no260_f14.g1 PHD_FILE: MSMg01no260_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:25 2005
         (627 letters)



>mm_chr10_33652870_33653895
          Length = 1026

 Score = 1135 bits (587), Expect = 0.0
 Identities = 617/627 (98%), Gaps = 1/627 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggctagcctgttctacagagtaagttctaggacagccacggctatacagagaaaccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggctagcctgttctacagagtaagttctaggacagccacggctatacagagaaaccct 260

                                                                       
Query: 61  gtgtcagaaaaataaaaaaataaaaaataaaaaggctagtcataagaatgcaactgtttc 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctcagaaaaataaaaaaataaaaaataaaaaggctagtcataagaatgcaactgtttc 320

                                                                       
Query: 121 catataaaatgtattagtaccctaacagagatacaaaaacataattggaaaaaaaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catataaaatgtattagtaccctaacagagatacaaaaacataattggaaaaaaaaaaaa 380

                                                                       
Query: 181 acaagacaagcaaacaaataaaacaataaccagaaaaagtggcatacattcttgagtaaa 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 -caagacaagcaaacaaataaaacaataaccagaaaaagtggcatacattcttgagtaaa 439

                                                                       
Query: 241 gcagatctgattattaatattagcttgccaactatgcaagtcttaagaatgttatataca 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 440 gcagatctgattattaatattagcttgccaactatgcaagtcttaagaatgttatataaa 499

                                                                       
Query: 301 ctctaagtgtcaagtacataacagtgttcatttggacccagaagaaacacagtatataaa 360
           ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 500 ctctaagtgtcaagtacataacagtgttcatttgggcccagaagaaacactgtatataaa 559

                                                                       
Query: 361 gcttttagtattcaaaatgaaatgagtaatacggtggccattatacttatgaggtaactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 560 gcttttagtattcaaaatgaaatgagtaatacggtggccattatacttatgaggttattg 619

                                                                       
Query: 421 aacctttgaattgtagtgtttccatttgaaatgtcctgtaaagtataaaataataacaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aacctttgaattgtagtgtttccatttgaaatgtcctgtaaagtataaaataataacaga 679

                                                                       
Query: 481 gttgatatattttacaaagaatataaaatatttcaattaataatccttgtgaggtgaaca 540
           |||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 680 gttggtatattttacaaaggatataaaatatttcaattaataatccttgtgaggggaaca 739

                                                                       
Query: 541 tgctaactacaaaactatggaaaaacccctcttgatactgacaacttttaaaatggtacc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgctaactacaaaactatggaaaaacccctcttgatactgacaacttttaaaatggtacc 799

                                      
Query: 601 atagacactgcatttaaattattagaa 627
           |||||||||||||||||||||||||||
Sbjct: 800 atagacactgcatttaaattattagaa 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1026
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1016
Effective search space:   626872
Effective search space used:   626872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)