BAC Information

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BAC

Clone NameMSMg01-262E06
Chromosome10 (Build37)
Map Location 46,655,044 - 46,655,712
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100041632, LOC668252, LOC100042387, LOC100041663, LOC100042398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262E06.T7 (MSMg01no262_e06.b1)MSMg01-262E06.TJ (MSMg01no262_e06.g1)
ACCAG404416AG404417
length754744
length of high quality
(start - end)
344 (64 - 407)669 (72 - 740)
definitionCHROMAT_FILE: MSMg01no262_e06.b1 PHD_FILE: MSMg01no262_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:52 2005CHROMAT_FILE: MSMg01no262_e06.g1 PHD_FILE: MSMg01no262_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGTAACCTGCTTCACATGAACAAAGCTGTTTTGACCGTCTCAGTGATGG
CATCAGTTTTAGATTAATGACCAAACTATTGAGATCCCCTTATGTCCACT
TATAACTAATGTCCACTTATAAGTGAGTACTACCATATGTGTCTTTCCAG
GTCTGGGTTATCTTACTCAGAATGATACTTTCTAGGTCCATCCATTTCCC
TGAAAATTTTATGATGCCCTTTTTTTTCATAGCTGAATAGTATCCTATTG
TGTAGATGAACTACATTTTCATTATTCATTCTTAAGCTGAGGGACATCTA
GATTGTTTCCAGTTTCTGGGTATTTACTGCTATGAACATCATTAAGCAGG
TGTCTTTGCCCCCCATAGTGCTGTATCTTTTGAGTATATTCTCAGGAGTG
GTATAGCAGACTCTTGGGGTACAACTATTTCCAGTTTTTTGAGAACTCAC
AAAATTAATTTCCTAAGTGCTTGCACAAGCTTACACCTCCCCTTGCAATG
GACCAGTTGCTCCCGAACTTTGTTAGCTTGCGCTGTCGATTGAGATTTTG
ATCTCACTCTTCGTAATGTGTTACAACACCTATCTTCTTTTTCCCTCCCC
GCACTCTTATATTTCCCCTATTATTCCTCCCCTTTTTTTTCATTTTTTAT
ATTATCTTCAACCCCTTTTTCTCATTTCCCTTACACTGTGCTTACATGCT
CTTA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTCAAAATAAAAAGCTGACTTTATAACT
GTTCCAAGTTCTGTATTCATCAGTGTTCCTGTTACTTAATTTGAGAAACA
GAATACTCACAAAAGCACATTCCTTAATGCACCCAGTTTTTGACGTTGTA
TTAATTAGCCAATTAATTAAAATTAATCAAATTTATCCTCTATCAAATAA
AAGTTTGTTTTGACATAAAGTAGAAAAGAATGTCATCAATTATTTCACTT
ATCATTTAGAATAATACACAGTAGAACAGATGAAATAGGTCAGCAGATAA
AGGGTCTTGTCACCAAGCTTTACAAACTGAATTTGACCCTTGCACCCATA
GAATAAAAGGAGCAACCTAATTTCTGAGAGTTATCCTCTAATATCATTGC
AAAATAACTAAAAAAACTTTAAAAAACATAACAAATTCATTGGAATGTAT
ATTTATGGTTTGCCACTATTTCCTAAGAATATTTTGTTTATTAACATTTT
GTAAAAAAAAAAAGATTTTTTTCATCATTTGAATAAAAACTATTGTTGCT
ATTTTAAATATCTTTTAAATGTTAATGTACCCATACATTAAAAAACTCAT
TACAAAGTGATTTTTGGCAGCTGCTTAGAAACTTATTATTAAATATAAGA
CTGCCTAACAGTGTGTTAGCCTTTAAAAACAAGTAATCAGACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_e06.g1 MSMg01no262_e06.g1 CHROMAT_FILE:
MSMg01no262_e06.g1 PHD_FILE: MSMg01no262_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:52 2005
         (669 letters)



>mm_chr10_46654844_46655912
          Length = 1069

 Score = 1270 bits (657), Expect = 0.0
 Identities = 666/669 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcaaaataaaaagctgactttataactgttccaagttctgtattcatcagtgttcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 tttcaaaataaaaagctgactttataactgttccaagttctgtattcatcagtgttcctg 810

                                                                       
Query: 61  ttacttaatttgagaaacagaatactcacaaaagcacattccttaatgcacccagttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ttacttaatttgagaaacagaatactcacaaaagcacattccttaatgcacccagttttt 750

                                                                       
Query: 121 gacgttgtattaattagccaattaattaaaattaatcaaatttatcctctatcaaataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gacgttgtattaattagccaattaattaaaattaatcaaatttatcctctatcaaataaa 690

                                                                       
Query: 181 agtttgttttgacataaagtagaaaagaatgtcatcaattatttcacttatcatttagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 agtttgttttgacataaagtagaaaagaatgtcatcaattatttcacttatcatttagaa 630

                                                                       
Query: 241 taatacacagtagaacagatgaaataggtcagcagataaagggtcttgtcaccaagcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 taatacacagtagaacagatgaaataggtcagcagataaagggtcttgtcaccaagcttt 570

                                                                       
Query: 301 acaaactgaatttgacccttgcacccatagaataaaaggagcaacctaatttctgagagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 acaaactgaatttgacccttgcacccatagaataaaaggagcaacctaatttctgagagt 510

                                                                       
Query: 361 tatcctctaatatcattgcaaaataactaaaaaaactttaaaaaacataacaaattcatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tatcctctaatatcattgcaaaataactaaaaaaactttaaaaaacataacaaattcatt 450

                                                                       
Query: 421 ggaatgtatatttatggtttgccactatttcctaagaatattttgtttattaacattttg 480
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ggaatgtatatttatggtttgtcactatttcctaagaatattttgtttattaacattttg 390

                                                                       
Query: 481 taaaaaaaaaaagatttttttcatcatttgaataaaaactattgttgctattttaaatat 540
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 389 taaaaaaaaaaagatttttttcatcatttgaataaaaactattgatgctattttaaatat 330

                                                                       
Query: 541 cttttaaatgttaatgtacccatacattaaaaaactcattacaaagtgatttttggcagc 600
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 329 cttttaaatgttaatgtacccatacatttaaaaactcattacaaagtgatttttggcagc 270

                                                                       
Query: 601 tgcttagaaacttattattaaatataagactgcctaacagtgtgttagcctttaaaaaca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgcttagaaacttattattaaatataagactgcctaacagtgtgttagcctttaaaaaca 210

                    
Query: 661 agtaatcag 669
           |||||||||
Sbjct: 209 agtaatcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)