BAC Information

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BAC

Clone NameMSMg01-262I15
Chromosome10 (Build37)
Map Location 96,193,465 - 96,193,956
singlet/doubletsinglet
Overlap genenone
Upstream geneEea1, EG432491, LOC667380, Btg1
Downstream geneLOC628256, 4930556N09Rik, EG667407, Dcn, Lum, Kera, Epyc, 4921510H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262I15.T7 (MSMg01no262_i15.b1)MSMg01-262I15.TJ (MSMg01no262_i15.g1)
ACCAG404613AG404614
length814744
length of high quality
(start - end)
270 (46 - 315)491 (73 - 563)
definitionCHROMAT_FILE: MSMg01no262_i15.b1 PHD_FILE: MSMg01no262_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:13 2005CHROMAT_FILE: MSMg01no262_i15.g1 PHD_FILE: MSMg01no262_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATCTTTCCCGACTTTTATCATGAATGGGTGTTGGATTTTGTC
AAATGCTTTCTCAGCATCTAACGCCATGATCATGTGGTTTTTGTCTTTGA
GTTTGTTTATATACTGGATTACATTGATGGATTTCCATATATTAAACCAT
CCCTGCATCCCTGGGATGAAACCTACTTGGTCAGGATGGATGATTGTTTT
AATGTGTTCTTAGATTTGGTTAGCAAGAACTTTATTGAGGATTTTTGCAT
CGATATTCATAAGGTAAATTTTTCTGAAGTTCTCTATCTTTCTTGAGTCT
TTTTGAGGTTTATTTTTTTCACCCCCCCTCCTCCATATATTGATTTCTTT
ATATTATTTTTCATTTTGTCCCCCCCCCCAAATAATATTCCCTCATCTGT
AATTTCATTTCCTCCTTTCTCTCTCTCTTTTTATTATCTTCTTGCCTCTA
TATATTATTCCCGTTCCCTCGTCAATTTTACTATACTTCCTCTCCCTTTC
TTTTAATTCATCTTTCATATTATATATCCTATATATACTTCAATAAATAT
TTACTACTTCCAATTTATTTTCTATTTATTTCTTTTTTTTTTTATTTTTT
TACTCTTATCTTTCCCTTTCTCTTTCACACTATATTCCCTCTTTATTCTT
CCTCTCCCTTTTTATTCTCTACTTCATCTCTTTTCTTACTATCCTATATT
ATTTTCTTCTCACCGCTTCTTCATCTTTCCCTCTCACTCAATTTTATTTC
TCTTTCCTCTTAAN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTACAGTGTTCGAGCCCCGAGCTGGTA
GTGTCTTGGCAGGCGTGAGCTTTTGGACATCTGATGTCTGGAGCATTAGA
AGAGCTTTGCGCCTGTTGCTCCCCTCTTCTAGCAGGAAGAATTGTCAGAA
ACAGCATCTCATTCATGGCGTGCTGGGGTCTCCTGACTGATTACACCCTC
ACTGTAGGAAGACTGACTGCTAGGGATTTAGCAATTAGCTCGTGACTAAA
CTTTATTCCGCAAGCATTTGAAATTTCTTTATCAACCAAACTCAGTTTCA
AAAAATTGCACGGAGTTACTCCAAAAATATTTCTGGTTATTCTTAAGTTT
TTTTTCTTTCCCCTTATGTAATCTTTCATTTGCAATACATTTTTATATGA
TTTCATTGGCATTTCCCCACCATTGTTTAAATCTTAAATGAAACAACTAT
TTGTGCCTTTGGCCTCTTGAATTTAGTCTTTCTTCCTTCTGACATCTTTT
CAATTTCTTTATAACTTTCTTCTAATTTTCATGTGTCCGGGCTTTGTGTT
TTTCCCCGTTTTATCCGCCCCCCCTTTCTTTATCGATCATTTTTTTTTCC
ATGTTTTTTCTCCTTTCTTTTCCCCCCTTTTAATCCCGCCTCAATCCTCC
TTTTTTTTCTCCTCCCCCATTACTCACTTCTTATTTTTTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_i15.g1 MSMg01no262_i15.g1 CHROMAT_FILE:
MSMg01no262_i15.g1 PHD_FILE: MSMg01no262_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:13 2005
         (491 letters)



>mm_chr10_96193265_96194156
          Length = 892

 Score =  897 bits (464), Expect = 0.0
 Identities = 485/492 (98%), Gaps = 1/492 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttacagtgttcgagccccgagctggtagtgtcttggcaggcgtgagcttttggacatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttacagtgttcgagccccgagctggtagtgtcttggcaggcgtgagcttttggacatct 260

                                                                       
Query: 61  gatgtctggagcattagaagagctttgcgcctgttgctcccctcttctagcaggaagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgtctggagcattagaagagctttgcgcctgttgctcccctcttctagcaggaagaat 320

                                                                       
Query: 121 tgtcagaaacagcatctcattcatggcgtgctggggtctcctgactgattacaccctcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcagaaacagcatctcattcatggcgtgctggggtctcctgactgattacaccctcac 380

                                                                       
Query: 181 tgtaggaagactgactgctagggatttagcaattagctcgtgactaaactttattccgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtaggaagactgactgctagggatttagcaattagctcgtgactaaactttattccgca 440

                                                                       
Query: 241 agcatttgaaatttctttatcaaccaaactcagtttcaaaaaattgcacggagttactcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcatttgaaatttctttatcaaccaaactcagtttcaaaaaattgcacggagttactcc 500

                                                                       
Query: 301 aaaaatatttctggttattcttaagtttttttt-ctttccccttatgtaatctttcattt 359
           ||||||||||||||||||||||||||||||||| |||||   || |||||||||||||||
Sbjct: 501 aaaaatatttctggttattcttaagtttttttttctttctttttgtgtaatctttcattt 560

                                                                       
Query: 360 gcaatacatttttatatgatttcattggcatttccccaccattgtttaaatcttaaatga 419
           ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 gcaatacatttttatatgacttcattggtatttccccaccattgtttaaatcttaaatga 620

                                                                       
Query: 420 aacaactatttgtgcctttggcctcttgaatttagtctttcttccttctgacatcttttc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacaactatttgtgcctttggcctcttgaatttagtctttcttccttctgacatcttttc 680

                       
Query: 480 aatttctttata 491
           ||||||||||||
Sbjct: 681 aatttctttata 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 892
Length adjustment: 10
Effective length of query: 481
Effective length of database: 882
Effective search space:   424242
Effective search space used:   424242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)