BAC Information

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BAC

Clone NameMSMg01-262N06
Chromosome10 (Build37)
Map Location 31,739,306 - 31,739,553
singlet/doubletsinglet
Overlap geneTcba1
Upstream geneLOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638
Downstream geneEG667761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262N06.T7 (MSMg01no262_n06.b1)MSMg01-262N06.TJ (MSMg01no262_n06.g1)
ACCAG404822AG404823
length737915
length of high quality
(start - end)
254 (46 - 299)33 (82 - 114)
definitionCHROMAT_FILE: MSMg01no262_n06.b1 PHD_FILE: MSMg01no262_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:34 2005CHROMAT_FILE: MSMg01no262_n06.g1 PHD_FILE: MSMg01no262_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAATCCGCGGA
ATTCTTTTCAGTCTCACGATCTCTAAATATAGTGTAGATTTGGTTAAGGC
TTCCTGCTCTAGGTCTTATGTTGGGGTTGCCAACTCAGTGGGAAAGGAGT
AAAGTGTGGAGGTCAGACACCAGACCTCAGCTAAGACAAAGGTGAGGAAA
ACTGCTCACTTCTTTGGTATAGCCTTGCACTTAGAAAGAGAGCATCCTGC
TCTTCTGTATTCTGTCTGGTTTGGATCATTGCTGCTCTTCATTGGTAATA
ACCCTTATGAACCAGTTTCCTGATTGTGACTGAGCCACTATGAAAGTTAC
AGTTTTGTGACATGTCAGCTTAAGACCAGTGGCCCTGTGAAGTGACCTGA
ATTTATTCTTTGGAACCTGTCCACCAAGTAATAACCACATTCTTTTGGCT
TAAGTCATCAATACTAGCATGATTATTTCTTCTAGTTTTCCCCAAGATAT
TCTGGCTATTTCTCTAGTCTTCACTTCTGCGCCTCATTCACTCTTACAGT
GTGTCTTATTGCCAGAAAAGGATATACGTTTATTCTGTGCTCATCTCACA
CCTTTTTTTTATTTTTTATTCCTTTTCTTTTTTATTGTTACTTATCCTCC
CTTGCCTCCAATGTATCTTATTTCTTATATTTCTTTTTTGTTTTCTCTAT
TTCTTTTTATTGTTTCCTTGCAACCTCCTTTATTTTT
ACCATACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCTCAAAATATACAAACTGTGTTCCATGTGTGTGTG
TATGTGCATGTGTCTTGTCTTTGTTTCCTCCTGTGTGTGTGTGTAAAATC
TCTCACCAAATACCTCTCCTCTTACAATACCACTTCTACTATAACACACT
CCTACAACTTCACTCCACTCCACCTCTCCTCCCCTCACTAATAACCCATA
CACTCATCTAACACAACCCCCATACCCTTCCTTTACCATAAAAACCACAC
AACTAAAACCCCAATAACAAACACAACTTAACCCAACAAAAACAAAACCC
AAAAAAAAAAAAACCACCTTATTTTCTTCTAATAAATTCTCAACATTACA
CCCCACATACATATACTACAATACATCTTTTTATCTACACACCTCACCCC
ACCCCCCTACTTAATTTAATAAAAATAATACAAATCCCACATTCTTCTTA
CTTCCCACCCCACACACAAAATAAAATAACATAATCATACAACCCAATCA
TACACAATAAAAATCCCAATCATACATCATCATCCATTCACAATCAATAC
TACATACTACACTATTACATATACTATCAAACTATAAATATCACTATATC
CCACCACAAAAAAATAAAATCTCCACTATACTTAATTTAAAAAAATCAAA
TCCATTACTATCCATCTATATCCCAATCAATTTACTCTATCCTATAATAA
TTTACAATATAACTCCCCAATAACAAACCATCAAACTACCACCATTAACT
ACTCCACTTACATAAAATCACACTTCCTCATTTACCCACACATTACCCAC
TCCAACAAATACTACATCACTCCATAACTACCCACCACCATCTACTACAC
ACAACAAAATACCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_n06.b1 MSMg01no262_n06.b1 CHROMAT_FILE:
MSMg01no262_n06.b1 PHD_FILE: MSMg01no262_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:34 2005
         (254 letters)



>mm_chr10_31739104_31739757
          Length = 654

 Score =  437 bits (226), Expect = e-127
 Identities = 243/250 (97%), Gaps = 4/250 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattcttttcagtctcac--gatctctaaatatagtgtagatttggttaaggcttcct 60
           ||||||||||||||||  ||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcttttcagtc--accagatctctaaatatagtgtagatttggttaaggcttcct 260

                                                                       
Query: 61  gctctaggtcttatgttggggttgccaactcagtgggaaaggagtaaagtgtggaggtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 gctctaggtcttatgttggggttgccaactcagtgggaaaggagtaaagtgtggatgtca 320

                                                                       
Query: 121 gacaccagacctcagctaagacaaaggtgaggaaaactgctcacttctttggtatagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacaccagacctcagctaagacaaaggtgaggaaaactgctcacttctttggtatagcct 380

                                                                       
Query: 181 tgcacttagaaagagagcatcctgctcttctgtattctgtctggtttggatcattgctgc 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct: 381 tgcacttagaaagagagcatcctgctcttctgtattctgtctgctttggatcattgctgt 440

                     
Query: 241 tcttcattgg 250
           ||||||||||
Sbjct: 441 tcttcattgg 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)