BAC Information

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BAC

Clone NameMSMg01-262N09
Chromosome10 (Build37)
Map Location 33,910,378 - 33,910,666
singlet/doubletsinglet
Overlap geneDse
Upstream geneTrdn, A330019N05Rik, LOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik
Downstream geneTspyl1, Tspyl4, Nt5dc1, Col10a1, Frk, LOC667824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262N09.T7 (MSMg01no262_n09.b1)MSMg01-262N09.TJ (MSMg01no262_n09.g1)
ACCAG404828AG404829
length742762
length of high quality
(start - end)
343 (66 - 408)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no262_n09.b1 PHD_FILE: MSMg01no262_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:34 2005CHROMAT_FILE: MSMg01no262_n09.g1 PHD_FILE: MSMg01no262_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CCAACTTACCCAAACTGAATGGCTGAGAGGCACCTAAAGAAATGTTCAGC
ATCTTTTGTTTTTCTACCCTTTTGTTTGTTTGTTTGTTTGTCTGTCTGTT
TGTTTGATTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAA
CTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATGGCCTGTCTCTG
CCTCCCAAGCGCTGGGATTAAAGGCGTGTGCCACCACTGCCCAGCTATGT
TCAGCATCCTTAGTCTTCAGGGAAATGCAAATCAAAACAGCCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAACTCAGGCGATGCTG
AGTGAGGACCCGCAGAAAGAGGAACACTCCTCCATTGCTGGCGGAATTGC
AAGCTGGTACAACCACTCTGGAAATCAGTTTGGCAGTTCCTCAGAAAATT
GGATATAGTACTACCTGAGGTCCCAGCAATACCTGTCCTGTACATATATC
CATAAGATCGCTCCAACATGTACTAAGGACTCCTGCTCCTTTATGTTTAT
TGACGCCTTATCTTGTCATATCCTGAAGCTATTATGAATCTACATGCTCC
TTCCCAGATCAATGCATATTGAAAATGTGATATCCTTACCCATTGCAGTA
CTACTCACATTCTTACTCAAATGTACGGAACTATTAAACATC
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAGTCTCACATAACTAAGTTGAT
AGAAATGAACTTCAAGTTATATTATGAAACCGTGTGGTGCCTCCATGAGA
ACCAATCAGGAGGCAGGGATAGGAATGCTTTTTGATTGCAAAAGGCTGCT
CTTAAAACAGTGTCACACACCATCGTTACCTTCTGTGTGGTTTCGCTGTG
TGGGCACAGGGCTATAATTACTCCTTCAGTAACATGTGGTAATTCTAGAG
GGTTCCACACGTTGTCCTCTCGTATTGTGGATTTTTGGGTGAGAATGGCT
TTTGGGGGACGGTGTATTTTACTCTACTCTTACATAATGAATAGTTTGCT
TATTGAAAGAAATTTTCCCCCCCACCAAATTATGATAGTTTGAACTTGAC
ACTATCTGACCTCACAACAAGTTTAGCATAAACAATCTACCTTATTTATA
ATTTCCCCCACCACAGTTTTTTATTATACATTCCCCCCCTCCCCCCCACT
CTTATTTTTTTTTTTCTCCCTTTATGCTCTCCCCCTTCCTTATTTTATAT
ATTTCTCTTTTTTTTTATAATAATTCCCCACCCCCCCGCACCACATATTA
TCCCCCCTCTCTTTTTTGTTCATGCCACCTCTCGTTATCATCTATATTTT
TAATCTATCCTATTCCCCATCACTACTTACCTCATTTATACTATAATCTC
TCCTACACCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_n09.g1 MSMg01no262_n09.g1 CHROMAT_FILE:
MSMg01no262_n09.g1 PHD_FILE: MSMg01no262_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:34 2005
         (289 letters)



>mm_chr10_33910178_33910866
          Length = 689

 Score =  505 bits (261), Expect = e-147
 Identities = 282/289 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagtctcacataactaagttgatagaaatgaacttcaagttatattatgaaaccgtgtg 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctagtgtcacataactaagttgatagaaatgaacttcaagttatattatgaaaccgtgtg 430

                                                                       
Query: 61  gtgcctccatgagaaccaatcaggaggcagggataggaatgctttttgattgcaaaaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gtgcctccatgagaaccaatcaggaggcagggataggaatgctttttgattgcaaaaggc 370

                                                                       
Query: 121 tgctcttaaaacagtgtcacacaccatcgttaccttctgtgtggtttcgctgtgtgggca 180
           |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 369 tgctcttaaaacagtgtcacacaccatcattaccttctgtgtggttttgctgtgtgggca 310

                                                                       
Query: 181 cagggctataattactccttcagtaacatgtggtaattctagagggttccacacgttgtc 240
           ||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 309 cagggttataattactccttcagtaacatgtgacaattctagagggttccacacgttgtc 250

                                                            
Query: 241 ctctcgtattgtggatttttgggtgagaatggcttttgggggacggtgt 289
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 atctcgtattgtggatttttgggtgagaatggcttttgggggacggtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)