BAC Information

Click to search

BAC

Clone NameMSMg01-262P05
Chromosome10 (Build37)
Map Location 104,421,764 - 104,422,133
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573, BC067068, Ccdc59
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262P05.T7 (MSMg01no262_p05.b1)MSMg01-262P05.TJ (MSMg01no262_p05.g1)
ACCAG404909AG404910
length749726
length of high quality
(start - end)
364 (42 - 405)345 (76 - 420)
definitionCHROMAT_FILE: MSMg01no262_p05.b1 PHD_FILE: MSMg01no262_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:43 2005CHROMAT_FILE: MSMg01no262_p05.g1 PHD_FILE: MSMg01no262_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTATTCTCATTTTCTGACCCTGGGTGTATAGTAGTCTTTTTTGGGGGT
TGGGTAGTGTACTGTACTCTGACTTGATACCTTTCCTGGTCCTCTTAGAA
TTTCATTCGATGAATTTTGATAATATTCATCCATTTACCTCCCAGGCTCC
TTGCTCTTCCACTCAGTATCATCCTTCTAGGAAGGCAGTCTTTCTTCCCC
CACCCCCTTTCTCTCTCTGTGTGTTTTCATCTTGAACTTGACTGCCAATA
ACATTTGCCATATAATGTGTGGTTATAAAAGATGCATAACATTCTGGGTT
GGTTACTTTTATGTCATTTTGACACAAGTTAGAATTATTTGAAAAGAGTT
ACTCACTACCCACCACGCTTATAATATTGGCTGATAGGAAAACCTGCAGG
GCATTTCCTTGGTTCACAGTTGATACAGGCGGGTCCAGGTCATTGGATGC
AATACCCCTTTTAGACATGTGGTCCTGGGCGTTATAAGAAAGCACTGGGT
AGTAAGCCTACAAGCATCTAGCATCGTTATATGACCTTCTTTAGCTTTTG
CCCCTCCTGCCATACTCCTTTTCCTGATGCCCTTCATCGCCGCTATCGTA
ACCCGTATCTTGCAATCAGAAATTACGCCCTTTTCCTCTTCTAGTCGCTT
TTGCACCCGACGCTTCTTTATTCCCTTTCAATTGCATATCCTCACTTTA
TTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAGAGTCATGTATGAATCCTTTTA
TTTCAACTGCAAATGGAGTTATTTTGCCTTCTTCCCTTATCTTTGATTCC
AATTTGTATCCCTTTGTTATCCCTCAGATATCTTATTGTTCTAGTTAAGA
CTTCAAGAACTATATTGAATAGGTACAGAACGAATGGACAGCCTTGTCTT
GTTCCTGATTTTAATGGAATTGCTTTTAGTTTCTCTCCAATTAACATGAT
GTTGTTATAGGTTTGCTGTAAGCTGCCTTTATTATGTTTTTTTTTTCCTG
AAGAGGACGTATATTCAATTCCTAGTAACCACCTGGTGATTTATAACCAT
CACTAACTCCAGTTTCAAACACCGCGATACTCTTTTGTGACTTCCACAGG
CATCAAGCACATACATGATGCATATATATACATTCCTTCGAATCACTCAC
ACAACTAGTATATCCAATAAAATGTTTAAAAATATTCAAGATTTTCCATT
ACTATTTTATATGCCTCATTTCCTTTAAATGTTTTATCCTGCCCTTCTTT
TTCCTGTACTCCTACGCCTACATGCAACTGTTTCATAACCGTTGTTTCTT
TCTTCACTTATTCTTTCTTGTTTATTTTCATATCTTTATGCACATTATCC
CGCTTTTTTAATATCATTGCAATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_p05.b1 MSMg01no262_p05.b1 CHROMAT_FILE:
MSMg01no262_p05.b1 PHD_FILE: MSMg01no262_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:43 2005
         (364 letters)



>mm_chr10_104421475_104422238
          Length = 764

 Score =  603 bits (312), Expect = e-177
 Identities = 351/370 (94%), Gaps = 10/370 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttattctcattttctgaccctgggtgtatagtagtcttttttgggggttgggt 64
           |||||| |||||| ||||||||| |||||||||||||||||||||||| |||||||| ||
Sbjct: 659 gaattccttattcacattttctgcccctgggtgtatagtagtctttttggggggttgagt 600

                                                                       
Query: 65  agtgtactgtactctgacttgatacctttcctggtcctcttagaatttcattcgatgaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 599 agtgtactgtactctgacttgatacctttcctggtcctcttagaatttcattcaatgagt 540

                                                                       
Query: 125 tttgataatattcatccatttacctc----------ccaggctccttgctcttccactca 174
           |||||||||||||||||||||||| |          ||||||||||||||||||||||||
Sbjct: 539 tttgataatattcatccatttaccaccccccccccaccaggctccttgctcttccactca 480

                                                                       
Query: 175 gtatcatccttctaggaaggcagtctttcttcccccaccccctttctctctctgtgtgtt 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gtatcatccttctaggaaggcagtctttcttcccccaccccctttctctctctgtgtgtt 420

                                                                       
Query: 235 ttcatcttgaacttgactgccaataacatttgccatataatgtgtggttataaaagatgc 294
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ttcatcttgaacttgacttccaataacatttgccatataatgtgtggttataaaagatgc 360

                                                                       
Query: 295 ataacattctgggttggttacttttatgtcattttgacacaagttagaattatttgaaaa 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ataacattctgggttggttacttttatgtcattttgacacaagttagaattatttgaaaa 300

                     
Query: 355 gagttactca 364
           ||||||||||
Sbjct: 299 gagttactca 290


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)