BAC Information

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BAC

Clone NameMSMg01-263C18
Chromosome10 (Build37)
Map Location 37,860,294 - 37,860,586
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040846
Downstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263C18.T7 (MSMg01no263_c18.b1)MSMg01-263C18.TJ (MSMg01no263_c18.g1)
ACCAG405068AG405069
length760761
length of high quality
(start - end)
718 (41 - 758)292 (75 - 366)
definitionCHROMAT_FILE: MSMg01no263_c18.b1 PHD_FILE: MSMg01no263_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:01 2005CHROMAT_FILE: MSMg01no263_c18.g1 PHD_FILE: MSMg01no263_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCACCTGAGTGACACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAAC
ATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACC
TCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGC
TGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTG
CAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAAT
TGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCTTGGGCATTTAT
CCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCAT
AGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCT
CAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTAC
TACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGAT
GGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCAGAAAGGAACT
CACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTAGGAT
TCCCAAGATATAAGGTACAATTTGCTAAACACATGAAACTCAAGAAGAAT
GAAGACTGAAGTGTGGACACTATGCCCCTCTTTAGAATTGGGAACAAAAC
ATCCATGGAN
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATAATGGCAATTTCCAATAGCATTC
TTCTGCTTATATTCTTTAGCAACAACTTCCTGATTATTATGTCATAATAA
AACTATTTTTTATATTGTTAAGGTATTCTAAATGACCAAGTTGCTTTATT
GAACATTTTGTTCAGGAAATACAAAACCATCACTGCTTTATATCACTGCA
TCATAAATCATTAGTGTTCTATGGTCATAAAAATAATATCTAAACTGTAA
TTGTAAAATGCTACTTTTATTACATATCTAGTACTTCCAAACTAATTACA
TTTTCTTATTCTGTGGACTATCTTCTACGCCCCACATGATATGACTTTGT
AATAATATAAAAATAAAATAGAATTTCATAAGAAACATAAAAGGAGTGGA
AATGATAATTTTGAATGAACAAAAGGGAAAGATGAAAACACTAGAGTCAG
AAAACAGAAAAACTGGGGTTAGGCACATTCTTGCATTTAACTACCCATTT
GTGGCTTCCCAGGGCTACATGATCATCCATAAATTCACACTCAAGAAAGA
ACTATTCATATTACAGAAAAGGAAAATAAAATAAGATGAGATGAAAGAAA
CCAATAACAACAACAAGCAACACATATACATAAAAACTAAGATATTTTAA
TTTACAACTTTACATTGAGCAGCTCTGAAAAATGCCTTATGGTGGGCCAG
CTGGAGAATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_c18.g1 MSMg01no263_c18.g1 CHROMAT_FILE:
MSMg01no263_c18.g1 PHD_FILE: MSMg01no263_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:01 2005
         (292 letters)



>mm_chr10_37860094_37860786
          Length = 693

 Score =  514 bits (266), Expect = e-150
 Identities = 287/294 (97%), Gaps = 3/294 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataatggcaatttccaatagcattcttctgcttatattctttagcaacaacttcctgat 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 aataatggcagtttccaatagcattcttctgcttatattctttagcaacaatttcctgat 260

                                                                       
Query: 61  tattatgtcataataaaactatttttt-atattgttaaggtattctaaatgaccaagttg 119
           ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| 
Sbjct: 261 tattatgtcgtaataaaactatttttttatattgttaaggtattctaaatgaccaagtt- 319

                                                                       
Query: 120 ctttattgaacattttgttcaggaaatacaaaaccatcactgctttatatcactgcatca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctttattgaacattttgttcaggaaatacaaaaccatcactgctttatatcactgcatca 379

                                                                       
Query: 180 taaatcattagtgttctatggtcataaaaa-taatatctaaactgtaattgtaaaatgct 238
           ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 380 taaatcattagtgttctattgtcataaaaaataatatctaaactgtaattgtaaaatgct 439

                                                                 
Query: 239 acttttattacatatctagtacttccaaactaattacattttcttattctgtgg 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acttttattacatatctagtacttccaaactaattacattttcttattctgtgg 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 693
Length adjustment: 9
Effective length of query: 283
Effective length of database: 684
Effective search space:   193572
Effective search space used:   193572
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)