BAC Information

Click to search

BAC

Clone NameMSMg01-264A04
Chromosome10 (Build37)
Map Location 128,155,635 - 128,155,945
singlet/doubletsinglet
Overlap geneSi
Upstream geneMyo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2
Downstream geneDgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264A04.T7 (MSMg01no264_a04.b1)MSMg01-264A04.TJ (MSMg01no264_a04.g1)
ACCAG405675AG405676
length713847
length of high quality
(start - end)		317 (45 - 361)283 (130 - 412)
definitionCHROMAT_FILE: MSMg01no264_a04.b1 PHD_FILE: MSMg01no264_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:05 2005CHROMAT_FILE: MSMg01no264_a04.g1 PHD_FILE: MSMg01no264_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGAAACTGCATCACTGTCTGTTCCCTCCCAGCTAGCCTCTGTCCA
TTCCGTTTCTTCTAGTTCATGTTTAAGTACTCACCAGGAACAACAAGTTG
GGTGCTGGCCACTGCCAGGCTGTTGGCGTCAGCCAAAGACACATTGAGGC
AATAAGTCCCTGAGCCACCTTTCAGCACTTGGTGTAGAACCAGCTGGCAG
TCTGGGCTCGGTGGAACAGACTGGCACAGCCTCTGGGCAGGGGGCTGGCA
CCCTGGTGATGAAATGTCCATACAGGCTTCCTTGGGTAGCCTGAGAAGAG
GATGAGTTTTTTTTTTGCACACCCCCTCACCGGGTAAGCACACACTGACT
GCTCTTCTGGAGCAGTTCAAATCTCAGCAACCACATGGTGGCTCACAACC
ACCCATAATGAGATCTGACGCCCTCTTCTAGTGCTGTCTGAAGACAGCTA
CAGTGTGCTTAGATACAATAATAAATAAATCTTTGGGCCTGAGCAAGAGA
GGNCAACCAGAGCGAGTGGGGTTGACCAGAGTAAGCAGAGGTCCTAAATT
CAATTCTCAACAACCATATGAAGGCTCACAACTATCTGTACAGCTACAGT
GTACTCATATACATTAAATAAATAACCAAACAAGCAATATATAAGAGTAC
GAGTTGGCATCAC

ATTTATTAATTNGGGCGNCNNANCACTCTTCACTCTTTTTTTNNNNNCTC
ACTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGCTAGGACTCTTGAGTCCA
GGGATGGTGGACTATATATATAAAAGGCAAGAATGGCTCCAGTGGACAGT
CCCATACCCCATGCATACCGGTGACACTAAATGGACCCAGGATGTTATTA
ATAACAACAATGAAAAGGAGGACAGGAAATCAGGAAGGGGAAGGGCATGA
GGGTAATCTGGAAGGAGATAAAGGTGGATTGGTATGATCAAAAGATATCA
CATAACTGTATTACATTTCCAGATAATATATAACAAATATTATTTAGGGC
TGGTGAGATGGCTCATTTTTTTATTATCACCCCCCCCCCCCCCAAGTTCC
TGAGTTCGAATCCCAGCAACCACATGGTAGCTCACAAACAACCGTAATGA
GACCTGACACCTTCTTCTGGCACGTTGGAAGACCACTACTGTGTACTTAT
GTATAATAATAAATAACATCTTTATAAAACCAAACAAAACCTATATTATT
TAAAGTAAGGTGTTGAGGGTTGTGGGCCTGGAGAATATGGTTCACTCGCG
CCAGAGTTCCTAACGAATGATCCCAGGTCTTGGATTCTCAGATCCCACTT
TGTAGGTTTTACTAACTTCTCCTTATTTCTTGTTTTCTTTATTTTATACT
ATGTGATCTCTCGTTTGTCTTTCTCCTGTTAATTCTTGTTCATCTTTGGT
GGTTACTTTTATATAATTTTGTTATTATGCGACCTTAATCCCACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_a04.b1 MSMg01no264_a04.b1 CHROMAT_FILE:
MSMg01no264_a04.b1 PHD_FILE: MSMg01no264_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:05 2005
         (317 letters)



>mm_chr10_128155431_128156147
          Length = 717

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagaaactgcatcactgtctgttccctcccagctagcctctgtccattccgttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattccagaaactgcatcactgtctgttccctcccagctagcctctgtccattccgttt 456

                                                                       
Query: 65  cttctagttcatgtttaagtactcaccaggaacaacaagttgggtgctggccactgccag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cttctagttcatgtttaagtactcaccaggaacaacaagttgggtgctggccactgccag 396

                                                                       
Query: 125 gctgttggcgtcagccaaagacacattgaggcaataagtccctgagccacctttcagcac 184
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 395 gctgttggcgtcagccaaagacacattgaggcaatatgtccctgagccacctttcagcac 336

                                                                       
Query: 185 ttggtgtagaaccagctggcagtctgggctcggtggaacagactggcacagcctctgggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttggtgtagaaccagctggcagtctgggctcggtggaacagactggcacagcctctgggc 276

                                                                       
Query: 245 agggggctggcaccctggtgatgaaatgtccatacaggcttccttgggtagcctgagaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 agggggctggcaccctggtgatgaaatgtccatacaggcttccttgggtagcctgagaag 216

                      
Query: 305 aggatgagttt 315
           |||||||||||
Sbjct: 215 aggatgagttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |