BAC Information

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BAC

Clone NameMSMg01-264B21
Chromosome10 (Build37)
Map Location 51,655,642 - 51,678,788
singlet/doubletdoublet
Overlap genenone
Upstream geneSim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik
Downstream geneVgll2, Ros1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa, Slc35f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264B21.T7 (MSMg01no264_b21.b1)MSMg01-264B21.TJ (MSMg01no264_b21.g1)
ACCAG405752AG405753
length737758
length of high quality
(start - end)		277 (46 - 322)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no264_b21.b1 PHD_FILE: MSMg01no264_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:13 2005CHROMAT_FILE: MSMg01no264_b21.g1 PHD_FILE: MSMg01no264_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,655,642 - 51,655,912)(51,678,498 - 51,678,788)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACAAAGCAGCAACTGCCCTAACTCTCACCTCCAGCACATGTGGA
GCCTTTCACAGTGCCCACTCCTTAACATTTCCTCCTACTGTCACTCAGCC
CTTCAATTCTGCTCTATGAGTCTCCAGGAAGTTTGAAAAGAGGGAATAAA
GCAGCTGGGCAACATGGAAACCAAACGGTGAAAATAACTGGTGTAAATTT
TTACTTGTAATATGAACATCTTAATCCCTATTTGGGATACATATGTGCCC
TAGTTGTTTTGGGTTTTTTTGTTTTTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTTTTTTTTTTTTTCCCCCCCCCCCCCCCTTTTNTTTTTTTTTTT
TTTTTTTNTTTTTTNNCCCCCCCACAAAAAAAAAAAATTNTTTTTTGGTG
CCCTTTATATACCATACTATTTCTTCTCTCTTTACTTTTATTTCTTTAAA
ATTATTCTTCCTTTTTCCTCTTATTTATTATTTTTATAATTCCTTATTTA
TCTCTTTTATCTCTTTTATTTTTTTTATTTCCAACATCATTCCTTCTTAA
TTACTTCCTCTTTTTTTATTTTTTTTTTCATTCTCATTATTCATTTTTAT
TTTTTTTTTTCTCCTTCTCTTTCTTTACTTATTTTTTAATACTTTTCCAT
TTTTTATACTAATTTATCACTACCTTTTTTTTTTACC

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATACACCCGAGATCATTTGCAAC
TATTTATGCTTGGCTAGAAATTTAGGCTAAACTCCAAACAGGGTAAGAAA
CATAATGATCAATATTTCTGATGCAATTGATGAGAAAAATGATTTTTAGG
AAAATGTTTGAGTAAACTTTTTAAATGTATTAGTAAAATTTAGAGGGCAT
AGAGGAGAAGACTGACAGAAATATGAAATTTGAAAGTTACAAAACAAAAG
ACGGACTAGGAGAAACACAATAATACAATACACCAATGGTGTCTGACAAG
ATTGAGCGATAATAAATATTTTTTAGAACCACCCACCGGAACAGATGAAG
ATATGATGGGCAATTCTCAGAAACGACAAAAAGATAAGTATATGAAAGCC
TGTTGAACATCATCAATAATTGGGGGATTTCAACAGGAAAGGGTATTTCC
TACCAACTCTGTCAATCATTAAATGTATAAGCTTTGCGCTGGAGAGATGG
CTCAGCATTTAAACCAGGTACCACACTGTACCTGTAGAAACCTGAGTTTG
GTTCTTAGCCACCATGCAACTTCACCTCCAGGAGATCTGGCATTCTTTTC
TGAACTTTGTGGACATCTGCACTTATGTGCACATTGCTACAAATAGACCC
ACATATTTACACCATTAAACATCATAAAGACCAATCTAAATAAATAGACA
TCCACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_b21.b1 MSMg01no264_b21.b1 CHROMAT_FILE:
MSMg01no264_b21.b1 PHD_FILE: MSMg01no264_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:13 2005
         (277 letters)



>mm_chr10_51655439_51656115
          Length = 677

 Score =  485 bits (251), Expect = e-142
 Identities = 266/271 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccacaaagcagcaactgccctaactctcacctccagcacatgtggagcctttca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccacaaagcagcaactgccctaactctcacctccagcacatgtggagcctttca 263

                                                                       
Query: 64  cagtgcccactccttaacatttcctcctactgtcactcagcccttcaattctgctctatg 123
           | ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 264 cggtgcccactccttaacatttcctcccactgtcactcagctcttcaattctgctctatg 323

                                                                       
Query: 124 agtctccaggaagtttgaaaagagggaataaagcagctgggcaacatggaaaccaaacgg 183
           |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 324 agtctccaggaagtttgaaaagagggaagaaatcagctgggcaacatggaaaccaaacgg 383

                                                                       
Query: 184 tgaaaataactggtgtaaatttttacttgtaatatgaacatcttaatccctatttgggat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgaaaataactggtgtaaatttttacttgtaatatgaacatcttaatccctatttgggat 443

                                          
Query: 244 acatatgtgccctagttgttttgggtttttt 274
           |||||||||||||||||||||||||||||||
Sbjct: 444 acatatgtgccctagttgttttgggtttttt 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no264_b21.g1 MSMg01no264_b21.g1 CHROMAT_FILE:
MSMg01no264_b21.g1 PHD_FILE: MSMg01no264_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:13 2005
         (291 letters)



>mm_chr10_51678298_51678988
          Length = 691

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatacacccgagatcatttgcaactatttatgcttggctagaaatttaggctaaactcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tatacacccgagatcatttgcaactatttatgcttggctagaaatttaggctaaactcca 432

                                                                       
Query: 61  aacagggtaagaaacataatgatcaatatttctgatgcaattgatgagaaaaatgatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aacagggtaagaaacataatgatcaatatttctgatgcaattgatgagaaaaatgatttt 372

                                                                       
Query: 121 taggaaaatgtttgagtaaactttttaaatgtattagtaaaatttagagggcatagagga 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 371 taggaaaatgtttgagtaaagtttttaaatgtattagtaaaatttagagggcatagagga 312

                                                                       
Query: 181 gaagactgacagaaatatgaaatttgaaagttacaaaacaaaagacggactaggagaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaagactgacagaaatatgaaatttgaaagttacaaaacaaaagacggactaggagaaac 252

                                                              
Query: 241 acaataatacaatacaccaatggtgtctgacaagattgagcgataataaat 291
           ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 acattaatacaatacaccaatggtgtctgacaagattgagcgataataaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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