BAC Information

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BAC

Clone NameMSMg01-264B24
Chromosome10 (Build37)
Map Location 98,140,779 - 98,204,023
singlet/doubletdoublet
Overlap geneEG432494
Upstream geneEpyc, 4921510H08Rik, EG667438
Downstream geneAtp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264B24.T7 (MSMg01no264_b24.b1)MSMg01-264B24.TJ (MSMg01no264_b24.g1)
ACCAG405758AG405759
length704742
length of high quality
(start - end)		314 (46 - 359)292 (75 - 366)
definitionCHROMAT_FILE: MSMg01no264_b24.b1 PHD_FILE: MSMg01no264_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:13 2005CHROMAT_FILE: MSMg01no264_b24.g1 PHD_FILE: MSMg01no264_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,140,779 - 98,141,088)(98,203,732 - 98,204,023)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCAAGATTCTTTTGAAGCCCCAGAGCAACCAAGAATTTTTAATA
TTTTTGTACTAAAAAATGCATTCTTAGATTCTCTGCCTATGCCTATAATG
AGTACGATAGCATAAGCCAGGTCAACCATCATCAGAAAACCCACTGCGTA
TATGGCAATGAGGAATATGTTTGTCTCCCCATCCTCCCTATTTTATTAAT
TAAACGTCCCATTACATGAGCCATGTACTCAATTTTCACTGAACTTTTCA
CAATCCAGAAAGTCACTGGTCTTGGTCCAACTACTATAAACTTTTATTGC
CCTCTCTGTTATTGTATACCCCTNTCTACCACCTAACGTTTTACTTTTCT
TCTAAAATAAGAGATTTGCTTAAAGGAAGAAATCTAGTTGTTAGTCCTAA
TGATGCTAAATCCAGTGCCTAATTGAGTTTCTAAGAAGTGATGAATGATC
TGAACAAAGTTTAAAGACATTTGCAGAGTCCAGGTTATTGATGTGATACT
AGATTTTCTTCCTCCCTCCTCTTTTCTCCTTATTTTTGATTATACCTTGA
ATGGTTACACAGCCAAAGAATACATCATTCTGTGGNGATGAAAACTAGAA
ACAGTACAGAAATCGTATTTATTCAAGAATAAGGGCTAAAAGTACTTTGC
ATTG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTATCAGGAATGCAAGTTTTATAGT
ATTTAATAGAAAACACAGAAATATATTAAATATTTCTTATAAATCCTTCT
TGTTTTTAAACATTCTTTTCTTTAAACTCACTAAGTTCTGGGCTCTCTTT
TTCTGTCCCCTCTTCTAGTAAGCAGGTTCAAGAGGGAAGGAATACCTGTG
GTAGTTGATTTAGGACAAAGAATTAATGAGCCTGGCTATTTCATCTGCAT
GATTTAAGGTGAGCCAACCTTTTAGGCATGGTCCTTTGACCAGGAGATTG
ACCTGGCCCCGTTGTATTATTACGCCACCACCCAGGGGCTTATCTTCTCT
TGAGCACCAGAAATTTCTCTAAACAGGTTTTCATTGCTGCCTTAACATTC
TGCCTCCCCAAAGACGTAACTTCAAAATACGGTTAGGAACTAGATCAGAG
ATCAGAGCTGCCCAATGCTTTTGGTATCTTTTGCCTCTGGCAAGGGTGAA
GCTGCCTTGGGACCGATGAGACATTTCCAGCTTTTGGTTAAGAAAGAAAG
TGGATATTTTTCTTTATCCTAAACTACCTAGCCAGTTTTTTACCTCCTGT
TCTTATCACTCCTTCTCCTTCCGAAGACATAACCCAACTGTCATTATGAG
ATTGGTGAGCTGATTGGCCTGTTTTCTTAAGTTGAATTTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_b24.b1 MSMg01no264_b24.b1 CHROMAT_FILE:
MSMg01no264_b24.b1 PHD_FILE: MSMg01no264_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:13 2005
         (314 letters)



>mm_chr10_98140575_98141288
          Length = 714

 Score =  553 bits (286), Expect = e-162
 Identities = 304/310 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccaagattcttttgaagccccagagcaaccaagaatttttaatatttttgtac 64
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccaagattctttttaagccccagagcaaccaagaatttttaatatttttgtac 264

                                                                       
Query: 65  taaaaaatgcattcttagattctctgcctatgcctataatgagtacgatagcataagcca 124
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaaaaatgcattcttagatgctctgcctatgcctataatgagtacgatagcataagcca 324

                                                                       
Query: 125 ggtcaaccatcatcagaaaacccactgcgtatatggcaatgaggaatatgtttgtctccc 184
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 ggtcaaccatcatcagaaaacccactgagtatatggcaatgaggaatatgtttgtctccc 384

                                                                       
Query: 185 catcctccctattttattaattaaacgtcccattacatgagccatgtactcaattttcac 244
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 385 catcctccctattttattaattaaacgtcccattacatgagacatgtactcaattttcac 444

                                                                       
Query: 245 tgaacttttcacaatccagaaagtcactggtcttggtccaactactataaacttttattg 304
           |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 445 tgaacttttcacaatccagaaagtcactggacttggtccaaccactataaacttttattg 504

                     
Query: 305 ccctctctgt 314
           ||||||||||
Sbjct: 505 ccctctctgt 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no264_b24.g1 MSMg01no264_b24.g1 CHROMAT_FILE:
MSMg01no264_b24.g1 PHD_FILE: MSMg01no264_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:14 2005
         (292 letters)



>mm_chr10_98203532_98204223
          Length = 692

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttatcaggaatgcaagttttatagtatttaatagaaaacacagaaatatattaaatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cttatcaggaatgcaagttttatagtatttaatagaaaacacagaaatatattaaatatt 433

                                                                       
Query: 61  tcttataaatccttcttgtttttaaacattcttttctttaaactcactaagttctgggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tcttataaatccttcttgtttttaaacattcttttctttaaactcactaagttctgggct 373

                                                                       
Query: 121 ctctttttctgtcccctcttctagtaagcaggttcaagagggaaggaatacctgtggtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ctctttttctgtcccctcttctagtaagcaggttcaagagggaaggaatacctgtggtag 313

                                                                       
Query: 181 ttgatttaggacaaagaattaatgagcctggctatttcatctgcatgatttaaggtgagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ttgatttaggacaaagaattaatgagcctggctatttcatctgcatgatttaaggtgagc 253

                                                               
Query: 241 caaccttttaggcatggtcctttgaccaggagattgacctggccccgttgta 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 caaccttttaggcatggtcctttgaccaggagattgacctggccccgttgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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