BAC Information

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BAC

Clone NameMSMg01-264J06
Chromosome10 (Build37)
Map Location 10,934,298 - 11,085,631
singlet/doubletdoublet
Overlap geneShprh, Fbxo30, Epm2a
Upstream geneLOC665110, 9130014G24Rik, Rab32, EG382450, Grm1
Downstream geneEG666732, LOC100039343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264J06.T7 (MSMg01no264_j06.b1)MSMg01-264J06.TJ (MSMg01no264_j06.g1)
ACCAG406086AG406087
length739874
length of high quality
(start - end)
315 (45 - 359)286 (125 - 410)
definitionCHROMAT_FILE: MSMg01no264_j06.b1 PHD_FILE: MSMg01no264_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:48 2005CHROMAT_FILE: MSMg01no264_j06.g1 PHD_FILE: MSMg01no264_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,085,322 - 11,085,631)(10,934,298 - 10,934,583)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTCAATAGCCTAAGTAAGCCCTGAGTTTATGATTCACTTGTATCA
GGCCCCTGAGTATCTGGGGACAGCAGCCTATGCCACTGGTCCCAGACAAA
CCATCATTTCTTGTAAACTACCTCTTCTATGGGTAGCCTGCCTTCACGCA
ACATTCTCATGCCCCCTCCCCACATTACTCTTCACTACACCATATCCCAC
TTGTCCTCAGCACTCCACTGCAGACTTTAAATGAAGTCATCTCCTAACTC
CGGCATTAATGTTTCATCTTTCCTTACCTGCCTGCAATATTTAAAGCCAA
GACATCCTTAGTATTAGCCTCCCCCACTCCCCTCTCTGTTGTCCTGGAAG
ACCTCAAGTTCATGACCTCAGACTTCACTCTAAGCCATACTATCATCCCT
GTGGGTCCAGGAATGCTTATGCTCTCACATAAAGTGGTACAGCATTTGCA
TATAACATATGCATCCCCTCTATTCTTCAAGTCATCTCTAGGTCACTTAC
ACTACTCAACATGATCTTAAGGTAGCATAAATAGCTGCAGCACCTTATCA
TTTAAAAACTAATAACAAGAGAAAAGTCTGTATGCATTGAGTACAGATGC
AATTTTTCTGATTCAGACATTTCTGACTTAGTGTTGGNTGGTGGACTCCA
GATATGGAATCTAACAATACAAAAGGCTGAGTGTCTTGT
CCCCTTACCTTCTCTTTTTCTCTTTTTTAACTCATTTTTTTNTTTNTTTC
TATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGGATGACTTTGAAATTACAAAATA
AGAAGTAGCTTGTTGTATCCTAGCCTTGTGTTGGAATATAAATGTTCTTG
TTTCCTTCCCTTTAGCTGTTGAAATCAAGGGACCCTCAAGGTTCATTAGC
TCCTACCTAACTGTCCATAAAACTGTACTAGAAGTAGTTCCTGGGTCTCC
TTTATCCCGTGAGCTCTGGTGCTTAAGCTAAGGTGCATTTTCTTATCCAG
GTTTATAGGTGACAGGTCAGCTGAATAATACACGTTTTTTGGGTGCTTAT
TCTTTAGTTGAAGTTATTATTTTTATTGACCCCTCCCCCATGAAATTAAA
CATAATATTTTTTACAGCTCTTTTACATTCACTAAGAGCTTTTCTGTGTA
TTCCTGTGGTTAATATTTCTCACTATCCTGTGATATGGATATGATTAATG
ATATTCCTATTTTGTAGGTAAAGATCTTATGCTCATGAGTAAACTCGCCT
ATGATATGTATCAAATATACATATTATTTTCAGTCCCCCTGACATCATTA
CTATATGTTCTTCCAACAACGTTGTAGTTCACTGCTTGTTCTTTTAAATA
CTTCTTGTTTTTTATCTAAATTTACACATGGCTCATTTTTGTATATCATT
TTTTTTTTTAGCCTTCTCTATTAAATTTTATTTGCTTACTAATCGTGTTA
TATTTACTAACCCACCTTTCTTACTATTGTTATTTCTGATTAATATCAAT
CCAGCTCTAGTTGCTAATTCTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_j06.b1 MSMg01no264_j06.b1 CHROMAT_FILE:
MSMg01no264_j06.b1 PHD_FILE: MSMg01no264_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:48 2005
         (315 letters)



>mm_chr10_11085118_11085832
          Length = 715

 Score =  576 bits (298), Expect = e-169
 Identities = 307/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattcaatagcctaagtaagccctgagtttatgattcacttgtatcaggcccctg 64
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 514 gaattcattcaatagcctaagtaagccctgagtttatgatccacttgtatcaggcccctg 455

                                                                       
Query: 65  agtatctggggacagcagcctatgccactggtcccagacaaaccatcatttcttgtaaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 agtatctggggacagcagcctatgccactggtcccagacaaaccatcatttcttgtaaac 395

                                                                       
Query: 125 tacctcttctatgggtagcctgccttcacgcaacattctcatgccccctccccacattac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tacctcttctatgggtagcctgccttcacgcaacattctcatgccccctccccacattac 335

                                                                       
Query: 185 tcttcactacaccatatcccacttgtcctcagcactccactgcagactttaaatgaagtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tcttcactacaccatatcccacttgtcctcagcactccactgcagactttaaatgaagtc 275

                                                                       
Query: 245 atctcctaactccggcattaatgtttcatctttccttacctgcctgcaatatttaaagcc 304
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 atctcctaactgtggcattaatgtttcatctttccttacctgcctgcaatatttaaagcc 215

                     
Query: 305 aagacatcct 314
           ||||||||||
Sbjct: 214 aagacatcct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no264_j06.g1 MSMg01no264_j06.g1 CHROMAT_FILE:
MSMg01no264_j06.g1 PHD_FILE: MSMg01no264_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:48 2005
         (286 letters)



>mm_chr10_10934098_10934783
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggatgactttgaaattacaaaataagaagtagcttgttgtatcctagccttgtgttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggatgactttgaaattacaaaataagaagtagcttgttgtatcctagccttgtgttgg 260

                                                                       
Query: 61  aatataaatgttcttgtttccttccctttagctgttgaaatcaagggaccctcaaggttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatataaatgttcttgtttccttccctttagctgttgaaatcaagggaccctcaaggttc 320

                                                                       
Query: 121 attagctcctacctaactgtccataaaactgtactagaagtagttcctgggtctccttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attagctcctacctaactgtccataaaactgtactagaagtagttcctgggtctccttta 380

                                                                       
Query: 181 tcccgtgagctctggtgcttaagctaaggtgcattttcttatccaggtttataggtgaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccgtgagctctggtgcttaagctaaggtgcattttcttatccaggtttataggtgaca 440

                                                         
Query: 241 ggtcagctgaataatacacgttttttgggtgcttattctttagttg 286
           ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 441 ggtcagctgaagaagacacgttttttgggtgcttattctttagttg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)