BAC Information

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BAC

Clone NameMSMg01-264K14
Chromosome10 (Build37)
Map Location 16,406,166 - 16,406,469
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671439, LOC382457
Downstream geneLOC546472, LOC100039576, LOC627511
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264K14.T7 (MSMg01no264_k14.b1)MSMg01-264K14.TJ (MSMg01no264_k14.g1)
ACCAG406146AG406147
length713767
length of high quality
(start - end)
309 (46 - 354)293 (76 - 368)
definitionCHROMAT_FILE: MSMg01no264_k14.b1 PHD_FILE: MSMg01no264_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:54 2005CHROMAT_FILE: MSMg01no264_k14.g1 PHD_FILE: MSMg01no264_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAAAGAAAGTAGTGTGTATTTACAGTATAGGTCATTGAAAGTCA
ACAGGGTCTATTTTCATCCTCTTTTAAATGTTTAAATTTATTTTTATTTT
AAAACTAGGCTTTCACATGAATACGACACATCCTCTGCTCATTCCCCCTT
TCCGTATCTCCTACCTTTACCTTTTTTGCACATTTCCTTGCATCACCCCA
ATTTGTCCTACAAATAAATACTCTTTCATTGTTCACTTCCATTTACGACT
CCTAGATGGAAGTTTCATCATGAAGAGGTATGAAGTTTTAGATTGAGAAT
TTATNAATANGTGTTGCCAAGACGTTGCATACATTTATTGAATAAAATGA
TGCATCCAGTACCTAGCGTATCTCAATGATGAAGAACAGAACATGTCCCA
GTGAAACAGGGGACACAATCTGACAGTGGAACCATCAGAGATTGGCGAAG
GTGCTGGGAAGGCAGATGGGTACACAAGAGTCAACAGACAGACCTCATGG
ATCAGAGCAGAATGTATGAGCAGCCTCATGAGAAACAAGCTCAAAGTCTG
ATTACCCTATTTGAACTCATAAGGTATTTTTTTAGAGTTCTGTTTATTTT
AAAAATGAAAGCTTTCCAAACATGGGCTGCTGCCACCTTTAGGGATTAAA
ATATTCATCACAG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCCTGCATAACTGGAATGAAACAT
ACTTGGTCAGGATGGATGATTGTTTTCATGTGTTATTGAGGATTTTTGCA
TCGATATTCATAAGGGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTC
TTTTTGTGGTTTAGGTATCAGAGTAATTGTGGCTTCATATAATGAATTGG
GTAGAGTACTTTCTGTTTCTATTTTGTTGAATAGTTTGTGAAGAACTGTG
ATTAGATGTTCTTTGAAGGTCTGATTTTTCTCTGCACTAAACCCATCTGG
TCCTGGGCTTTTTTTTANGTTATTTCACAANACCANGCCTGATTCTATTT
CTTCAGGAGATATGGGACTATTTAGATCGTTAAATTGATCCTGATTTAAC
TTTGGTACCTGGAATCTGTCTAGAAATTTGTCCATTTCGTCCAGGTTTTC
CAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTATTGGA
TATCTACAGGATCTGATGTTATGTCTCCCTTTTTCTTTCTTACATTGTTA
ATTAGGATGTTGTCCCTGTGTCTTTTAATGAATCTTGTTTTATGATTAAT
CAAATCTTGATGATTTCTACAATGAAACTTGCTCCTCGATTGTGTTGATT
TCTTTTAATATTTATATTATTTTTCTAACTTGTTTTGTTTTTACCCTCTG
GTATTTCGTTTATCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_k14.b1 MSMg01no264_k14.b1 CHROMAT_FILE:
MSMg01no264_k14.b1 PHD_FILE: MSMg01no264_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:54 2005
         (309 letters)



>mm_chr10_16405857_16406565
          Length = 709

 Score =  580 bits (300), Expect = e-170
 Identities = 303/304 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacaaagaaagtagtgtgtatttacagtataggtcattgaaagtcaacagggtct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gaattcacaaagaaagtagtgtgtatttacagtataggtcattgaaagtcaacagggtct 554

                                                                       
Query: 65  attttcatcctcttttaaatgtttaaatttatttttattttaaaactaggctttcacatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 attttcatcctcttttaaatgtttaaatttatttttattttaaaactaggctttcacatg 494

                                                                       
Query: 125 aatacgacacatcctctgctcattccccctttccgtatctcctacctttaccttttttgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aatacgacacatcctctgctcattccccctttccgtatctcctacctttaccttttttgc 434

                                                                       
Query: 185 acatttccttgcatcaccccaatttgtcctacaaataaatactctttcattgttcacttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 acatttccttgcatcaccccaatttgtcctacaaataaatactctttcattgttcacttc 374

                                                                       
Query: 245 catttacgactcctagatggaagtttcatcatgaagaggtatgaagttttagattgagaa 304
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 373 catttacgactcctagatggaagtttcagcatgaagaggtatgaagttttagattgagaa 314

               
Query: 305 ttta 308
           ||||
Sbjct: 313 ttta 310


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)