BAC Information

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BAC

Clone NameMSMg01-264K18
Chromosome10 (Build37)
Map Location 27,914,440 - 27,914,746
singlet/doubletsinglet
Overlap genePtprk
Upstream geneLama2, LOC100040385, LOC100040961, LOC100040401
Downstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264K18.T7 (MSMg01no264_k18.b1)MSMg01-264K18.TJ (MSMg01no264_k18.g1)
ACCAG406154AG406155
length723791
length of high quality
(start - end)
312 (45 - 356)119 (76 - 194)
definitionCHROMAT_FILE: MSMg01no264_k18.b1 PHD_FILE: MSMg01no264_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:55 2005CHROMAT_FILE: MSMg01no264_k18.g1 PHD_FILE: MSMg01no264_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGGTGGGTTTCACTTCACCCACAGTGGATAAGTCCTGGCTTATCT
CTGCGGTTGCTGCTGACCCCACTCAGGCCTGAAGGATGGATCCTTTTTCA
TGATGAAGAGGCACTGTGAGAGGATGAAGCCATGGAAAGCAGAATTTCAT
GACCCAGGGCTCCAGAAGAGATGTAAGAGCCTGTTAGAACAGACTGGGGG
AACTATCTAAAATATGTTCATTCATATCTTAAGATTAACAATTAACCTCA
GACTCTAAAAAATAATGTTTCTAGGATCAGAAACTAATTGAGGTAATTAA
TATGTTTCNCTAAATTACNAAAACCANNGCCCTTCCGTATTTTTCATAAA
AATGGAACCCTTTTACTATCAAAAAAAATAGACTTGATTTACAGGAGAGA
TATACAACCCAATATGTGTGTTTTCCAAGTTTCTTAAAGCAGGTATTTTA
TGTTTTTTGTGTCTGTTTGTATGTGTGGTATATGTATGTATGTGTGGTTG
NNNNTNTNNNNNTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTCTTTTTTTTTTTTTTTTTTTTTTNNTTTNTTTTTTTTTTTTTTTT
TTTTTTNNNTTTTTTTTTTTTTTTTTTNNNTTTTTTTTTNTTTGTNTTTT
TTTTTTTNTTTTTTTTTTTTTAT
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGTCCTGACTTTCTTTGGTGATGA
ACAGCAATGTGAAAGAAGGATGATGAGGGACAGAAAGAAAGGAAGGAAGG
AAGGAAGGAGAGATGGTGAGGGAGGGAAGAAGAGAGGAAGGGAGGTATAT
TATTTTTTTATTTTTTTTTATTTTTATTTATTTTTTTTTTTTATTTCNTT
ATTTTTTTTTTTTTTTATTTTTTTTATTATTTTTTTTCTTATTTTTATTC
TTTTTTTTTTCTCTCAAACTTTTTTTTCTTTTTCATAAAAACAACAAAAA
AAAAAAAAATTTTAAAATGCACTCCCAAAACAAATTTCTTTTTTTTTTTT
TTTTGTTTTGGTTTTGTTTNNNNTTTAAAAATTTATTTAATAATTTTTTG
GGGGGTGGTGNTTTTTTTTTTTTATATTTTTATTTTTTTTTATTTTATTT
TTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTATTT
GTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTATTTATATTTTTTTTT
GTTTTATTTTTTTAATTTTTTTTTTTTTTAAAAATTTTATTTATTTTTTT
TTTTTTTTTATTTTTTGATTTTTTGTATTATTATTTTTTTTTATATCTTT
TTTGATGTGTTTGCTATTTTATTTTTTATATTTTTTTTATTTTTTATTTT
TTTTAATTATTTTTATTATTTTTTTTTTTATATTATTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_k18.b1 MSMg01no264_k18.b1 CHROMAT_FILE:
MSMg01no264_k18.b1 PHD_FILE: MSMg01no264_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:55 2005
         (312 letters)



>mm_chr10_27914237_27914948
          Length = 712

 Score =  563 bits (291), Expect = e-165
 Identities = 303/307 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctggtgggtttcacttcacccacagtggataagtcctggcttatctctgcggt 63
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 510 ggaattcctggtgggtttcacttcacccacagtggataagtcctggcttatctctgtggt 451

                                                                       
Query: 64  tgctgctgaccccactcaggcctgaaggatggatcctttttcatgatgaagaggcactgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tgctgctgaccccactcaggcctgaaggatggatcctttttcatgatgaagaggcactgt 391

                                                                       
Query: 124 gagaggatgaagccatggaaagcagaatttcatgacccagggctccagaagagatgtaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gagaggatgaagccatggaaagcagaatttcatgacccagggctccagaagagatgtaag 331

                                                                       
Query: 184 agcctgttagaacagactgggggaactatctaaaatatgttcattcatatcttaagatta 243
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 330 agcctgttagaacagactgggggaactatctaaaatatgttcattcctatcttaagatta 271

                                                                       
Query: 244 acaattaacctcagactctaaaaaataatgtttctaggatcagaaactaattgaggtaat 303
           |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 270 acaattaacctcagactctaaaaaataatgatactaggatcagaaactaattgaggtaat 211

                  
Query: 304 taatatg 310
           |||||||
Sbjct: 210 taatatg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)