BAC Information

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BAC

Clone NameMSMg01-264P04
Chromosome10 (Build37)
Map Location 73,476,815 - 73,477,007
singlet/doubletsinglet
Overlap genePcdh15
Upstream geneLOC432471, LOC544705, LOC100039981, LOC623191
Downstream geneEG630453, EG623346, Gnaz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264P04.T7 (MSMg01no264_p04.b1)MSMg01-264P04.TJ (MSMg01no264_p04.g1)
ACCAG406350AG406351
length743830
length of high quality
(start - end)
202 (46 - 247)238 (176 - 413)
definitionCHROMAT_FILE: MSMg01no264_p04.b1 PHD_FILE: MSMg01no264_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:16 2005CHROMAT_FILE: MSMg01no264_p04.g1 PHD_FILE: MSMg01no264_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCAACATATGGAAAATAATAATAAACTCATGGAAACTGCTGCGA
AACAGCATTTGGCTGTGGGTGACTCATTTTTAATTAATTAATCTGGAATT
AATCAACTGTGCTCTGGTCTTCTCTCCTATTTCCTCTCTGAGATTTGGAG
GATAAATCAATGAGCCTCTGGGGGTTGGGGTTGTATTTGTTTGACTTTGA
TTTATNTAATTTTAAATAANTTTTTTTTAATAAAAGGTATTTAANNANAA
AAAATNTNNNTTGATTTTTTTTTTTAAAAGAAAAAAANAAAAAAAAAAAA
ANANTTTTTTTTATTTTTCCCCCCCNACAACCCCCGANNAAAANANNNNN
NNNANGANNNNNNANNANNNCAAAAAAAAAAAAAAAAAAANGGGGGGGGG
GGGGGAGAGAAAGANAAGAAAGAAAGAAGAAGAANGGGAGAAAAAATAAG
AGGAAAAATGAGAGAGAAGAAGGGGAAGATANAGAGAAGAAGAGGGAAAA
GGGGATGAGGTGTAGTTAGTGTTAGATTTTGTTTATTGTAGTCATGAAAT
GGTTTAATATAATTATAGAATTTAAAAAAATAGAGTATTAAAATGAATAA
GAATAATTTAGCATTAAAATTTACTAAACGTAGGTTGTTTTCGATAAATG
AAATATAACATGGTGTATCCCTCCAGTCCACTTTACAAAAAAG
ACCCGGTTATACCNTTTTTCGCTCTTNNGGGGGNNTGGNGNTTNTTTACC
ATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTACATCCAGATCAGCCGGCAGCAGGAA
ATGAATGTCATACTAGACTTGGCCTAAGCATTTGAAACCTCAAAGCCCAC
TCCCTAGTGAAGTGGAAACTGGTTTCTTTGAATATTTTGATGTGGCAGAC
ATGTGAAAGAATGTTTTCCTGAAGCAGACACAGGTGAAAGGATGTTTCTG
TATAGCAAACACGTGTATGGACTCATGATGAAGGAGTATATATATGACCC
CATAGACAGTGGGAAAAAGCTCTGAGTATGTTTTGCTCTGCCTTGCTATT
CTTCACTAATGATTTTTTTTTACGCCCCCCCCCCCATAGTAATTTTGAGA
TAAATTTGTAGTACTGACACCTTTGTAAAGAACTCACTAAAGAATTGCTC
AGGAAGTTCCTGTGACTGTTTGCTGCCTCCATGGCTTCACCTCATTAGGT
TGGAAAGCCTTGCATTCTCTTCAGGACTGAACTAAACCTGCAGAATTGAG
CCTGGAAACTGTAGATGAAAGGTATAGTTGGTTGCTGCTGGATCACGTCC
GTTGGCTGCCCGCCTACACGACGGTGCTGACCCTGTTTAAAATGCATGTT
GGTGCTTGAGTAAATAACTGAATCTGCCGCCCGAAAAATATTTAGTTTGT
CTCTCTTCTAATTTTTGGGTCAACTTTATAAACCAACCCCTCATTGTAGT
TAATAATATATGTCTCCACTAAAATAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_p04.b1 MSMg01no264_p04.b1 CHROMAT_FILE:
MSMg01no264_p04.b1 PHD_FILE: MSMg01no264_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:16 2005
         (202 letters)



>mm_chr10_73476611_73477211
          Length = 601

 Score =  352 bits (182), Expect = e-102
 Identities = 191/194 (98%), Gaps = 1/194 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcaacatatggaaaataataataaactcatggaaactgctgcgaaacagcatt 64
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 205 gaattcagcaacatatggaaaa-aataataaactcatggaaactgctgcgaaacaacatt 263

                                                                       
Query: 65  tggctgtgggtgactcatttttaattaattaatctggaattaatcaactgtgctctggtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggctgtgggtgactcatttttaattaattaatctggaattaatcaactgtgctctggtc 323

                                                                       
Query: 125 ttctctcctatttcctctctgagatttggaggataaatcaatgagcctctgggggttggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttctctcctatttcctctctgagatttggaggataaatcaatgagcctctgggggttggg 383

                         
Query: 185 gttgtatttgtttg 198
           ||| ||||||||||
Sbjct: 384 gttatatttgtttg 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 601
Length adjustment: 8
Effective length of query: 194
Effective length of database: 593
Effective search space:   115042
Effective search space used:   115042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)