BAC Information

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BAC

Clone NameMSMg01-265H16
Chromosome10 (Build37)
Map Location 39,318,998 - 39,319,300
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337
Downstream geneTraf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265H16.T7 (MSMg01no265_h16.b1)MSMg01-265H16.TJ (MSMg01no265_h16.g1)
ACCAG406730AG406731
length719766
length of high quality
(start - end)
304 (4 - 307)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no265_h16.b1 PHD_FILE: MSMg01no265_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:58 2005CHROMAT_FILE: MSMg01no265_h16.g1 PHD_FILE: MSMg01no265_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTGATCCTCCTGCCTCTTCCTCCCAAGTGCTAGGATTGCAGGCATATGTC
ACCATGCCAGGCTTTAAGAATAAAGTTTTTAGTTCACTTTTTATGTGAAC
TAAATAAAGCTGCCTGTGGGTACATCCAGAAGCCAAGGAATTGTGTGAAT
CCAACAAAAGAAGACTGGGAAAATATAGGACTGGATGTCAGGATTTACAC
AATGGGCCACACACCAAACAGTGTTGGGGATCCTCATTGCCCCCCTGCTA
TCAAGCATCGCACAAAAGCTCTTGCCTATCCTGATGTCACATCTTCTCAT
CTGCTGTTTTCTTTGACATCCGCCCCCGCCCTCTTCTTTTTCCATCCTTT
ATCTCCCTAGCCCCACCCCCAGTCACTAGATAGAATAGAAACAAGGATAT
AGGGGAGAGAGGAATTAGGAAAATCCCTGAATCTAATTGCTTTCCTTTTA
TTTCTTCTTTGAGCTCTACTACATTTAAACAAAATCTTCTCCACCTCTTA
GAGTCCTATCATTTTATGTACCCTCTGACTATGTTGCAGAATTCCATGTC
AAACAATCACTAAAATTCTCATGAAGATGACAACTCCACTCCTCTGCTAG
AGTCTGTAGTTAATCATAGTCCGTCTGCTGTTTACAGTTCAGAAACCTCC
TCTTACAAAAAAACATTACTGTTTCCGTGGTTTTCAACTGTATCCCTTGC
ATTTATCTAAAATCTCCCT
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCCTTGGCTACATAGCAAGTTTGAG
GTCAGCCTGGACTATGTGAGATTTGTCTGAAAATTCCCTCTCTTCCTAAT
CAGGTCTTTTATGTAGCTCAGATTGTCTTGAACTCCCAATCCTGCCTCAG
CAACTCAAGTGCTGGTATGTGGCATCAAACGTGGCACAATTTCTAATAAT
TTCACCTACATATATTTCTGTTTCTATTCTATGAAAAACTATGAGCTCAA
AATGATACCTCAGATCTCAACCCAATAACGTAGAGACATCCTGGTCCTCT
ATATGTTACTCTCCTTACCAATAACCACCCCACCTGGTTCTGCTATTTGA
AATATATGGTTTATTCACCATATATTTATAATATATGGCTTCATACAAGC
TTAGAACACACACAAACATACATACATACACACACACAATTGCAGAGTTA
CTACTTCACCACTGAGAAAATTTTATTTAAAAACTAAGATTCAGTGTTTT
CTGAGTATAGAAAGTTCCTATAGAGTGAAATCTATAAATGGGGAATTTAG
TGAACCCTGAATTTTCACAAGTGCAACTGTCATGTTATACAACATTTCCA
TCATCTGTGTTGTCTTTTTGTGAGTTTGTCTTCATTTATCTTGCCACACA
GTGGGCCAAATGTTTAAAGTCAAGAGAAAGTCCATTCCTATGTGTTTGAA
CAGCAGCACACAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_h16.b1 MSMg01no265_h16.b1 CHROMAT_FILE:
MSMg01no265_h16.b1 PHD_FILE: MSMg01no265_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:58 2005
         (304 letters)



>mm_chr10_39318798_39319501
          Length = 704

 Score =  578 bits (299), Expect = e-169
 Identities = 302/303 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcctcctgcctcttcctcccaagtgctaggattgcaggcatatgtcaccatgccaggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcctcctgcctcttcctcccaagtgctaggattgcaggcatatgtcaccatgccaggct 260

                                                                       
Query: 61  ttaagaataaagtttttagttcactttttatgtgaactaaataaagctgcctgtgggtac 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaagaataaagtttttagtttactttttatgtgaactaaataaagctgcctgtgggtac 320

                                                                       
Query: 121 atccagaagccaaggaattgtgtgaatccaacaaaagaagactgggaaaatataggactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atccagaagccaaggaattgtgtgaatccaacaaaagaagactgggaaaatataggactg 380

                                                                       
Query: 181 gatgtcaggatttacacaatgggccacacaccaaacagtgttggggatcctcattgcccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgtcaggatttacacaatgggccacacaccaaacagtgttggggatcctcattgcccc 440

                                                                       
Query: 241 cctgctatcaagcatcgcacaaaagctcttgcctatcctgatgtcacatcttctcatctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgctatcaagcatcgcacaaaagctcttgcctatcctgatgtcacatcttctcatctg 500

              
Query: 301 ctg 303
           |||
Sbjct: 501 ctg 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)