BAC Information

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BAC

Clone NameMSMg01-265I17
Chromosome10 (Build37)
Map Location 129,465,028 - 129,465,317
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820
Downstream geneOlfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4, 5830405N20Rik, EG625068, LOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265I17.T7 (MSMg01no265_i17.b1)MSMg01-265I17.TJ (MSMg01no265_i17.g1)
ACCAG406778AG406779
length761764
length of high quality
(start - end)
316 (46 - 361)307 (76 - 382)
definitionCHROMAT_FILE: MSMg01no265_i17.b1 PHD_FILE: MSMg01no265_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:04 2005CHROMAT_FILE: MSMg01no265_i17.g1 PHD_FILE: MSMg01no265_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATGATTGTGGGCCCACTGTCGTACTTCTCTGGCTGTGAAATGAG
TTCCTTGGTCAGAAGCAATACTGTGTGGAATACCATGATGATAGATAAGG
CATTCTGTCAGTCCGTTAATGGTGGTTTTAGCAGAGGCATTACGTGCAGG
AAAGGCAAATCCATAACCAGAATAAGTATCTACTCCAGTAAGAACAAAAC
GCTGTCCTTTCCATGAAGGAAGTGGTCCAATGTAGTCAACCTGCCACCAG
GTTGCTGGCTGGTCACCTCGAGTATTGTTGCCATATCTGGGGCTCAGTGT
TGGTTTCTGCTGNNGTAGATATCCNAATCAGNACCCGCTGTAGCCAGGTC
AGCTTTGGTGAGCGCCCCCCCGCGTTGAAGAAAAAAACATAACCTCCATC
TCGACCACCATGGCCACTTTGTTCATGTGCCCATTGAGCAATGACAGGGA
TGGCTGGGGAGAGAGGCTGACTGTCCACAGAACGGGTCATCTTATCCACT
TGATTATTGAACTCCTCCTCGGCTGAAGTCACCTTTTGGTGAGCATTTAC
ATGGGACACAAATATCTTCACATCCTTTGCCCATTTGGAGAGATCTATCC
ACATACTTCTTCCCCAGATGTCCTTCTCACCAATTTTCCCATTTGTGACT
TTCCAAGTCCTTGACCTTCCATCCAATTCATTGGTTTACAGCCATGAGTC
AGTGATATAAC
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGACGGCCTTCCCCAATGGTGACT
AAATGCCTAAAATTAAATATTTTAAATTAATAACACTCCAAGCTCCCTAT
CAGAATGCAAGGTCTCCATTCAAAGCCAACTAAAATTTTCTTCAATTTCT
TTTAGGTTCATGTTTTAAAATTACAAATAGAGAATATTTGCTACCCAGAA
AACTTCTTTTTTTATTATTAGATATTTTCTTCATTTACATTTCAAATGCT
ATCCTGAAAGTCCCCTATACCCTACCCCCGCCCTGCGTCCCCAACCCACC
CAGTTCCACTTCCTGGTCTGTTTTTCCCCTCCCACACCACTTCTTATCAT
GACTCTAAGTAATTATGGACGCCCAACGATTAAATAGACATTTCCAGAGT
ATGATTTATGTAGGTATATTGCTACCTTTACGCAGAGATTTATTAAAGTA
TAAAATGCCAAAATTTCATGAACTGCCAATGAAAATTAGCAGACTTTTGT
TCCTATCCTCATCAACCATAAATCCTGCCACCAAAAATTTCACCATTGGT
GATTATTACTCCTTTTATATCCATTTCACTTTCTTTCTCTCTCCTTCCTT
CCTTCCTTTCTTTCTTTCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCTTTCTTTCTTTCTTTCTG
TCTCTCTCTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_i17.g1 MSMg01no265_i17.g1 CHROMAT_FILE:
MSMg01no265_i17.g1 PHD_FILE: MSMg01no265_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:04 2005
         (307 letters)



>mm_chr10_129464881_129465587
          Length = 707

 Score =  516 bits (267), Expect = e-151
 Identities = 285/291 (97%), Gaps = 1/291 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgacggccttccccaatggtgactaaatgcctaaaattaaatattttaaattaataaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atgacggccttccccaatggtgactaaatgcctaaaattaaatattttaaattaataaca 378

                                                                       
Query: 61  ctccaagctccctatcagaatgcaaggtctccattcaaagccaactaaaattttcttcaa 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctccaagctccatatcagaatgcaaggtctccattcaaagccaactaaaattttcttcaa 318

                                                                       
Query: 121 tttcttttaggttcatgttttaaaattacaaatagagaatatttgctacccagaaaactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tttcttttaggttcatgttttaaaattacaaatagagaatatttgctacccagaaaactt 258

                                                                       
Query: 181 ctttttttattattagatattttcttcatttacatttcaaatgctatcctgaaagtcccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctttttttattattagatattttcttcatttacatttcaaatgctatcctgaaagtcccc 198

                                                              
Query: 241 tataccctacccccgccctgcgtccccaacccacccagttccacttcctgg 291
           |||||||||||| | |||||| ||||||||||| ||| |||||||||||||
Sbjct: 197 tataccctaccctcaccctgc-tccccaacccatccacttccacttcctgg 148


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)